| Method | Number of proteins | Average ModZscore for all proteins | Comments |
|---|---|---|---|
| APSSP | 1312 | 76.5 | |
| APSSP2 | 672 | 82.9 | |
| JNet | ? | ? | no longer tested |
| JPred | 1218 | 73.8 | |
| PHD | 1599 | 71.0 | |
| PHDpsi | 1598 | 74.4 | |
| PROF_king | 1276 | 74.6 | |
| PROFsec | 1554 | 76.7 | |
| Prospect | 103 | 71.7 | |
| PSIpred | 1461 | 77.9 | |
| PSSP | ? | ? | no longer tested |
| SAM-T99sec | 543 | 75.6 | |
| SSpro1 | ? | ? | no longer tested |
| SSpro2 | 1348 | 76.9 |