METHOD about: | ../../doc/explain_method2.html#PX_about_SAM-T99sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 128 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for samt99_sec in month 2000_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_12 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_12 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_12 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
sec | 2000_12 | dssp | THIS_month:psum | 79.5 | 73 | 45 | 70 | 69 | 53 | 73 | 74.8 | 80.4 | 69.5 | 63.8 | 1.5 | 0.35 | 0.33 | 0.36 | 0.71 | 0.61 | 0.55 | 88 | 5 | 4.0 |
sec | 2000_12 | dssp | 1ci6:A | 94.6 | 100 | 0 | 0 | 94 | 0 | 0 | 94.6 | 100 | 100 | 0 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 100.0 | 5.0 | 0.00 |
sec | 2000_12 | dssp | 1ci6:B | 93.6 | 100 | 0 | 25 | 93 | 0 | 100 | 93.6 | 100 | 100 | 25 | 0.0 | 0.36 | 0.19 | 0.54 | 0.48 | 1.0 | 0.48 | 100.0 | 6.0 | 0.00 |
sec | 2000_12 | dssp | 1d2t:A | 86.0 | 92 | 0 | 74 | 86 | 0 | 85 | 55.3 | 49 | 100 | 67 | 0.4 | 0.39 | 0.39 | 0.39 | 0.68 | 1.0 | 0.69 | 100.0 | 4.0 | 0.00 |
sec | 2000_12 | dssp | 1dkc:A | 75.7 | 0 | 30 | 100 | 0 | 100 | 72 | 57.3 | 100 | 38 | 67 | 0.0 | 0.27 | 0.19 | 0.37 | 1.0 | 0.47 | 0.47 | 100.0 | 0.00 | 24.0 |
sec | 2000_12 | dssp | 1dl5:A | 58.0 | 67 | 28 | 75 | 57 | 71 | 55 | 51.6 | 68 | 32 | 51 | 12.9 | 0.13 | 0.13 | 0.14 | 0.39 | 0.32 | 0.41 | 0.0 | 6.0 | 18.0 |
sec | 2000_12 | dssp | 1dl9:A | 62.6 | 85 | 40 | 57 | 40 | 35 | 90 | 57.4 | 84 | 41 | 52 | 2.8 | 0.15 | 0.17 | 0.14 | 0.40 | 0.33 | 0.39 | 100.0 | 25.0 | 0.00 |
sec | 2000_12 | dssp | 1e2x:A | 89.6 | 94 | 70 | 77 | 94 | 87 | 72 | 91.9 | 97 | 81 | 72 | 0.0 | 0.51 | 0.51 | 0.52 | 0.76 | 0.77 | 0.68 | 100.0 | 0.00 | 0.00 |
sec | 2000_12 | dssp | 1ekt:A | 83.0 | 100 | 86 | 77 | 100 | 65 | 92 | 75.6 | 100 | 96 | 64 | 0.0 | 0.58 | 0.60 | 0.57 | 1.0 | 0.63 | 0.67 | 100.0 | 0.00 | 9.0 |
sec | 2000_12 | dssp | 1eo1:A | 91.1 | 92 | 92 | 90 | 85 | 89 | 94 | 93.4 | 100 | 92 | 91 | 0.0 | 0.67 | 0.68 | 0.66 | 0.85 | 0.88 | 0.82 | 100.0 | 1.0 | 0.00 |
sec | 2000_12 | dssp | 1f2d:A | 76.5 | 81 | 73 | 73 | 78 | 82 | 72 | 73.9 | 81 | 86 | 63 | 0.5 | 0.38 | 0.38 | 0.39 | 0.64 | 0.73 | 0.52 | 100.0 | 1.0 | 1.0 |
sec | 2000_12 | dssp | 1f53:A | 72.6 | 0 | 53 | 84 | 0 | 70 | 74 | 72.2 | 100 | 67 | 75 | 0.0 | 0.14 | 0.14 | 0.14 | 1.0 | 0.42 | 0.40 | 100.0 | 1.0 | 9.0 |
sec | 2000_12 | dssp | 1f5q:B | 83.4 | 92 | 0 | 60 | 85 | 0 | 75 | 78.2 | 80 | 100 | 72 | 0.0 | 0.26 | 0.25 | 0.28 | 0.56 | 1.0 | 0.56 | 100.0 | 5.0 | 0.00 |
sec | 2000_12 | dssp | 1f62:A | 74.5 | 0 | 50 | 83 | 0 | 22 | 85 | 41.9 | 0 | 37 | 43 | 0.0 | 0.07 | 0.07 | 0.08 | 1.0 | 0.24 | 0.08 | 100.0 | 7.0 | 9.0 |
sec | 2000_12 | dssp | 1f6d:A | 84.6 | 89 | 80 | 80 | 87 | 86 | 80 | 84.7 | 86 | 84 | 82 | 1.0 | 0.50 | 0.50 | 0.51 | 0.76 | 0.80 | 0.68 | 100.0 | 1.0 | 1.0 |
sec | 2000_12 | dssp | 1fjn:A | 74.4 | 70 | 62 | 80 | 100 | 55 | 73 | 81.4 | 100 | 50 | 84 | 0.0 | 0.41 | 0.40 | 0.42 | 0.79 | 0.47 | 0.48 | 100.0 | 7.0 | 2.0 |
sec | 2000_12 | dssp | 1fpo:A | 93.6 | 95 | 0 | 88 | 96 | 0 | 86 | 95.1 | 96 | 100 | 89 | 0.0 | 0.59 | 0.60 | 0.60 | 0.83 | 1.0 | 0.83 | 100.0 | 0.00 | 0.00 |
sec | 2000_12 | dssp | 1fr3:A | 79.1 | 70 | 84 | 73 | 63 | 88 | 70 | 86.2 | 70 | 97 | 72 | 4.4 | 0.36 | 0.37 | 0.36 | 0.60 | 0.69 | 0.60 | 100.0 | 1.0 | 2.0 |
sec | 2000_12 | dssp | 1fu1:A | 75.8 | 96 | 64 | 54 | 78 | 87 | 59 | 79.0 | 85 | 80 | 64 | 2.8 | 0.41 | 0.41 | 0.43 | 0.74 | 0.66 | 0.42 | 100.0 | 10.0 | 7.0 |
sec | 2000_12 | dssp | 1fwk:A | 81.8 | 95 | 72 | 74 | 82 | 89 | 75 | 79.6 | 90 | 69 | 78 | 0.6 | 0.52 | 0.52 | 0.53 | 0.81 | 0.74 | 0.61 | 100.0 | 5.0 | 5.0 |
sec | 2000_12 | dssp | 1fxk:B | 87.2 | 100 | 30 | 56 | 87 | 100 | 81 | 90.2 | 100 | 40 | 70 | 4.5 | 0.46 | 0.36 | 0.57 | 0.68 | 0.52 | 0.63 | 0.0 | 11.0 | 6.0 |
sec | 2000_12 | dssp | 1fxo:A | 70.2 | 61 | 76 | 75 | 85 | 61 | 66 | 70.7 | 61 | 84 | 71 | 5.8 | 0.29 | 0.29 | 0.29 | 0.59 | 0.57 | 0.50 | 0.0 | 10.0 | 5.0 |
sec | 2000_12 | dssp | 1g3j:B | 70.7 | 87 | 0 | 75 | 70 | 0 | 81 | 52.3 | 100 | 0 | 48 | 0.0 | 0.32 | 0.34 | 0.31 | 0.72 | -0.10 | 0.32 | 100.0 | 4.0 | 0.00 |
sec | 2000_12 | dssp | 1g6g:A | 66.1 | 0 | 70 | 78 | 0 | 68 | 64 | 63.4 | 0 | 80 | 65 | 1.5 | 0.16 | 0.14 | 0.20 | 1.0 | 0.50 | 0.36 | 100.0 | 11.0 | 1.0 |
sec | 2000_12 | dssp | 1g99:A | 77.1 | 85 | 70 | 71 | 77 | 84 | 72 | 81.9 | 86 | 84 | 75 | 1.7 | 0.38 | 0.38 | 0.39 | 0.67 | 0.72 | 0.55 | 100.0 | 4.0 | 3.0 |
sec | 2000_12 | dssp | 1gak:A | 86.1 | 92 | 0 | 72 | 92 | 0 | 76 | 70.2 | 78 | 0 | 55 | 0.7 | 0.40 | 0.41 | 0.40 | 0.72 | -0.01 | 0.65 | 100.0 | 0.00 | 0.00 |
sec | 2000_12 | dssp | THIS_month:psum | 79.5 | 73 | 45 | 70 | 69 | 53 | 73 | 74.8 | 80.4 | 69.5 | 63.8 | 1.5 | 0.35 | 0.33 | 0.36 | 0.71 | 0.61 | 0.55 | 88 | 5 | 4.0 |
sec | 2000_12 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_12 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_12 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |