Home - sec - acc - cm - fr - con - Bottom - Explain scores

EVA sec results for: JPRED month: 2000_12

METHOD about:	../../doc/explain_method2.html#PX_about_JPRED
METHOD url:	JPRED
TYPE :	sec
NPROT :	192
NWEEKS :	30
NOTE 1 :	here ALL results obtained for jpred in month 2000_12 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_12 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_12	dssp	ALL_proteins:psum	74.9	64	45	82	73	61	69	69.3	68.7	66.1	69.0	2.4	0.34	0.33	0.35	0.65	0.62	0.53	7604.1	7.5	5.9
sec	2000_12	dssp	ALL_proteins:sig	8.9	28	28	11	30	34	11	15.5	26.8	27.1	16.1	3.5	0.14	0.14	0.14	0.22	0.25	0.15	7547.9	7.1	5.8
sec	2000_12	dssp	ALL_proteins:errsig	0.64	2	2	0.86	2	2	0.83	1.1	1.9	1.9	1.1	0.25	0.01	0.01	0.01	0.01	0.01	0.01	544.7	0.52	0.42
sec	2000_12	dssp	THIS_month:psum	76.6	59	50	85	70	62	69	70.6	66	69	70	1.2	0.36	0.34	0.37	0.74	0.69	0.54	75	7.8	5.9

sec	2000_12	dssp	1d7y:A	75.6	74	64	84	89	82	66	69.9	77	69	65	0.2	0.40	0.39	0.42	0.75	0.63	0.53	100.0	4.0	6.0
sec	2000_12	dssp	1dkc:A	73.0	0	23	100	0	100	70	49.8	100	30	60	0.0	0.23	0.14	0.33	1.0	0.40	0.40	100.0	0.00	27.0
sec	2000_12	dssp	1dl5:A	56.8	45	32	91	64	80	49	48.0	54	39	49	8.5	0.15	0.14	0.17	0.34	0.39	0.42	0.0	10.0	18.0
sec	2000_12	dssp	1dl9:A	72.8	76	33	75	50	50	86	71.3	64	28	77	1.2	0.19	0.20	0.19	0.48	0.37	0.43	100.0	11.0	2.0
sec	2000_12	dssp	1ekt:A	83.0	100	86	77	100	65	92	75.0	100	93	64	0.0	0.58	0.60	0.57	1.0	0.63	0.67	100.0	0.00	9.0
sec	2000_12	dssp	1eo1:A	91.1	88	88	92	95	85	91	94.9	100	92	94	0.0	0.66	0.67	0.67	0.90	0.83	0.81	100.0	1.0	0.00
sec	2000_12	dssp	1ewn:A	75.4	40	67	97	90	95	67	63.7	43	77	65	1.0	0.42	0.37	0.48	0.54	0.73	0.59	100.0	13.0	8.0
sec	2000_12	dssp	1f2d:A	78.0	75	73	82	83	86	71	79.3	79	86	76	0.8	0.39	0.39	0.41	0.65	0.76	0.57	100.0	4.0	2.0
sec	2000_12	dssp	1f5q:B	78.9	77	0	82	92	0	61	82.4	85	100	74	1.6	0.26	0.29	0.23	0.55	1.0	0.57	100.0	11.0	1.0
sec	2000_12	dssp	1f62:A	84.3	0	75	93	0	50	88	73.5	0	62	79	0.0	0.24	0.19	0.29	1.0	0.57	0.34	100.0	7.0	3.0
sec	2000_12	dssp	1f6d:A	80.3	75	78	86	92	81	69	82.6	85	83	78	0.7	0.45	0.45	0.45	0.71	0.76	0.62	100.0	8.0	0.00
sec	2000_12	dssp	1f7c:A	77.5	73	0	86	95	0	64	77.3	82	100	68	2.7	0.30	0.35	0.26	0.62	1.0	0.60	100.0	15.0	4.0
sec	2000_12	dssp	1fjn:A	59.0	0	50	90	0	66	57	30.0	0	50	36	0.0	0.19	0.12	0.27	1.0	0.48	0.17	100.0	25.0	5.0
sec	2000_12	dssp	1fpo:A	90.6	90	0	90	96	0	76	93.8	96	100	87	0.0	0.51	0.53	0.49	0.77	1.0	0.77	100.0	4.0	0.00
sec	2000_12	dssp	1fu1:A	70.2	75	60	71	88	86	45	52.3	42	72	71	0.0	0.38	0.39	0.39	0.69	0.63	0.36	0.0	6.0	8.0
sec	2000_12	dssp	1fwk:A	78.7	82	59	89	92	85	65	79.1	90	65	79	1.3	0.47	0.46	0.48	0.81	0.63	0.61	0.0	4.0	8.0
sec	2000_12	dssp	1g6g:A	73.2	0	87	79	0	70	76	71.7	0	91	73	3.9	0.27	0.23	0.32	1.0	0.62	0.54	0.0	11.0	9.0
sec	2000_12	dssp	1g99:A	79.1	76	70	86	89	82	70	80.5	81	76	81	1.7	0.41	0.41	0.42	0.71	0.71	0.62	100.0	6.0	2.0
sec	2000_12	dssp	1ga6:A	69.1	49	61	90	96	80	58	63.1	64	67	58	0.8	0.33	0.31	0.37	0.60	0.61	0.47	0.0	15.0	6.0
sec	2000_12	dssp	1gak:A	86.1	92	0	72	89	0	76	74.0	78	0	66	0.7	0.35	0.32	0.38	0.66	1.0	0.65	100.0	2.0	1.0

sec	2000_12	dssp	THIS_month:psum	76.6	59	50	85	70	62	69	70.6	66	69	70	1.2	0.36	0.34	0.37	0.74	0.69	0.54	75	7.8	5.9

sec	2000_12	dssp	ALL_proteins:psum	74.9	64	45	82	73	61	69	69.3	68.7	66.1	69.0	2.4	0.34	0.33	0.35	0.65	0.62	0.53	7604.1	7.5	5.9
sec	2000_12	dssp	ALL_proteins:sig	8.9	28	28	11	30	34	11	15.5	26.8	27.1	16.1	3.5	0.14	0.14	0.14	0.22	0.25	0.15	7547.9	7.1	5.8
sec	2000_12	dssp	ALL_proteins:errsig	0.64	2	2	0.86	2	2	0.83	1.1	1.9	1.9	1.1	0.25	0.01	0.01	0.01	0.01	0.01	0.01	544.7	0.52	0.42

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

All results

Explain scores - Home - sec - acc - cm - fr - con - Top