METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_12 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_12 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_12 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_12 | dssp | THIS_month:psum | 79.6 | 74 | 49 | 76 | 76 | 54 | 75 | 73.9 | 80.1 | 70.1 | 67.2 | 1.9 | 0.39 | 0.39 | 0.39 | 0.68 | 0.68 | 0.57 | 87.0 | 4.8 | 4.4 |
sec | 2000_12 | dssp | 1ci6:A | 98.2 | 98 | 0 | 100 | 100 | 0 | 75 | 100.0 | 100 | 100 | 100 | 0.0 | 0.73 | 0.81 | 0.66 | 0.85 | 1.0 | 0.85 | 100.0 | 1.0 | 0.00 |
sec | 2000_12 | dssp | 1ci6:B | 91.5 | 95 | 0 | 50 | 95 | 0 | 50 | 94.3 | 100 | 100 | 33 | 0.0 | 0.20 | 0.21 | 0.21 | 0.45 | 1.0 | 0.45 | 100.0 | 0.00 | 0.00 |
sec | 2000_12 | dssp | 1d7y:A | 81.5 | 82 | 75 | 85 | 85 | 87 | 76 | 78.8 | 85 | 76 | 76 | 1.2 | 0.47 | 0.47 | 0.48 | 0.77 | 0.73 | 0.65 | 100.0 | 0.00 | 4.0 |
sec | 2000_12 | dssp | 1dkc:A | 64.9 | 0 | 15 | 91 | 0 | 50 | 68 | 43.2 | 100 | 15 | 53 | 2.7 | 0.06 | 0.06 | 0.08 | 1.0 | 0.10 | 0.20 | 100.0 | 2.0 | 24.0 |
sec | 2000_12 | dssp | 1dl5:A | 72.6 | 81 | 58 | 75 | 80 | 80 | 61 | 66.9 | 82 | 62 | 56 | 3.1 | 0.33 | 0.33 | 0.34 | 0.71 | 0.57 | 0.49 | 100.0 | 0.00 | 8.0 |
sec | 2000_12 | dssp | 1dl9:A | 63.8 | 80 | 46 | 60 | 41 | 43 | 85 | 54.1 | 64 | 38 | 52 | 0.4 | 0.16 | 0.17 | 0.15 | 0.40 | 0.41 | 0.31 | 100.0 | 20.0 | 0.00 |
sec | 2000_12 | dssp | 1e2x:A | 89.2 | 92 | 70 | 81 | 96 | 70 | 69 | 86.4 | 89 | 81 | 74 | 0.0 | 0.52 | 0.54 | 0.51 | 0.79 | 0.68 | 0.68 | 100.0 | 3.0 | 0.00 |
sec | 2000_12 | dssp | 1edz:A | 75.1 | 83 | 56 | 75 | 81 | 70 | 70 | 68.6 | 82 | 60 | 59 | 1.2 | 0.35 | 0.35 | 0.36 | 0.71 | 0.55 | 0.52 | 100.0 | 0.00 | 3.0 |
sec | 2000_12 | dssp | 1ekt:A | 88.7 | 100 | 93 | 83 | 77 | 82 | 96 | 79.7 | 100 | 100 | 69 | 0.0 | 0.63 | 0.66 | 0.61 | 0.86 | 0.82 | 0.78 | 100.0 | 3.0 | 3.0 |
sec | 2000_12 | dssp | 1eo1:A | 91.9 | 92 | 96 | 90 | 96 | 81 | 95 | 98.4 | 100 | 96 | 98 | 0.0 | 0.71 | 0.72 | 0.70 | 0.92 | 0.84 | 0.83 | 100.0 | 0.00 | 4.0 |
sec | 2000_12 | dssp | 1ewn:A | 74.9 | 53 | 74 | 86 | 67 | 87 | 71 | 64.3 | 56 | 84 | 57 | 2.5 | 0.34 | 0.33 | 0.36 | 0.49 | 0.73 | 0.56 | 100.0 | 5.0 | 4.0 |
sec | 2000_12 | dssp | 1f2d:A | 79.8 | 76 | 78 | 83 | 85 | 77 | 75 | 79.4 | 75 | 89 | 80 | 2.3 | 0.40 | 0.41 | 0.41 | 0.67 | 0.74 | 0.63 | 100.0 | 4.0 | 0.00 |
sec | 2000_12 | dssp | 1f53:A | 76.2 | 0 | 71 | 78 | 0 | 67 | 82 | 76.8 | 100 | 74 | 78 | 0.0 | 0.19 | 0.19 | 0.19 | 1.0 | 0.50 | 0.50 | 100.0 | 0.00 | 2.0 |
sec | 2000_12 | dssp | 1f5q:B | 83.0 | 84 | 0 | 79 | 91 | 0 | 69 | 83.4 | 83 | 100 | 83 | 1.6 | 0.31 | 0.34 | 0.29 | 0.60 | 1.0 | 0.63 | 100.0 | 5.0 | 1.0 |
sec | 2000_12 | dssp | 1f62:A | 80.4 | 0 | 50 | 90 | 0 | 33 | 88 | 69.0 | 0 | 37 | 75 | 1.9 | 0.22 | 0.21 | 0.25 | -0.04 | 0.34 | 0.29 | 100.0 | 5.0 | 3.0 |
sec | 2000_12 | dssp | 1f6d:A | 88.0 | 90 | 84 | 86 | 93 | 85 | 82 | 89.8 | 95 | 83 | 85 | 0.5 | 0.59 | 0.59 | 0.59 | 0.84 | 0.82 | 0.75 | 100.0 | 1.0 | 0.00 |
sec | 2000_12 | dssp | 1f7c:A | 88.5 | 91 | 0 | 83 | 94 | 0 | 81 | 83.1 | 87 | 100 | 75 | 0.0 | 0.50 | 0.54 | 0.47 | 0.79 | 1.0 | 0.73 | 100.0 | 2.0 | 2.0 |
sec | 2000_12 | dssp | 1f8v:D | 76.0 | 91 | 0 | 61 | 91 | 0 | 88 | 60.8 | 100 | 100 | 42 | 0.0 | 0.52 | 0.62 | 0.42 | 0.83 | 1.0 | 0.55 | 100.0 | 0.00 | 16.0 |
sec | 2000_12 | dssp | 1fjn:A | 69.2 | 50 | 50 | 85 | 100 | 57 | 66 | 56.6 | 70 | 50 | 53 | 0.0 | 0.31 | 0.28 | 0.34 | 0.65 | 0.42 | 0.38 | 100.0 | 12.0 | 2.0 |
sec | 2000_12 | dssp | 1fpo:A | 87.1 | 92 | 0 | 72 | 90 | 0 | 82 | 61.5 | 61 | 100 | 60 | 1.7 | 0.38 | 0.40 | 0.37 | 0.65 | 1.0 | 0.70 | 100.0 | 1.0 | 1.0 |
sec | 2000_12 | dssp | 1fr3:A | 82.1 | 60 | 89 | 78 | 100 | 87 | 68 | 89.0 | 70 | 95 | 85 | 1.4 | 0.45 | 0.44 | 0.47 | 0.74 | 0.72 | 0.61 | 100.0 | 5.0 | 1.0 |
sec | 2000_12 | dssp | 1fu1:A | 62.9 | 98 | 18 | 52 | 59 | 83 | 68 | 59.5 | 82 | 24 | 59 | 18.5 | 0.23 | 0.19 | 0.28 | 0.50 | 0.31 | 0.48 | 0.0 | 29.0 | 23.0 |
sec | 2000_12 | dssp | 1fwk:A | 82.1 | 92 | 71 | 78 | 85 | 90 | 73 | 87.5 | 98 | 74 | 87 | 0.3 | 0.52 | 0.52 | 0.53 | 0.82 | 0.74 | 0.62 | 100.0 | 3.0 | 5.0 |
sec | 2000_12 | dssp | 1fx3:A | 73.4 | 79 | 74 | 66 | 90 | 74 | 59 | 75.7 | 96 | 65 | 69 | 0.0 | 0.41 | 0.42 | 0.42 | 0.77 | 0.61 | 0.42 | 0.0 | 4.0 | 0.00 |
sec | 2000_12 | dssp | 1fxk:B | 79.8 | 100 | 0 | 25 | 79 | 0 | 100 | 49.6 | 59 | 0 | 31 | 9.1 | 0.29 | 0.10 | 0.47 | 0.34 | 1.0 | 0.47 | 0.0 | 20.0 | 9.0 |
sec | 2000_12 | dssp | 1fxo:A | 84.9 | 84 | 85 | 84 | 88 | 90 | 78 | 81.5 | 85 | 88 | 74 | 0.3 | 0.55 | 0.55 | 0.56 | 0.78 | 0.84 | 0.69 | 100.0 | 1.0 | 1.0 |
sec | 2000_12 | dssp | 1g6g:A | 81.1 | 73 | 91 | 75 | 61 | 80 | 88 | 86.1 | 72 | 87 | 87 | 1.5 | 0.43 | 0.44 | 0.42 | 0.62 | 0.76 | 0.66 | 100.0 | 2.0 | 5.0 |
sec | 2000_12 | dssp | 1g8k:A | 72.7 | 61 | 55 | 88 | 85 | 71 | 67 | 65.0 | 66 | 64 | 64 | 2.4 | 0.29 | 0.28 | 0.31 | 0.61 | 0.56 | 0.53 | 100.0 | 9.0 | 4.0 |
sec | 2000_12 | dssp | 1g99:A | 79.4 | 81 | 77 | 78 | 81 | 81 | 75 | 81.2 | 84 | 80 | 78 | 2.7 | 0.40 | 0.41 | 0.41 | 0.68 | 0.74 | 0.62 | 100.0 | 0.00 | 1.0 |
sec | 2000_12 | dssp | 1ga6:A | 69.6 | 61 | 48 | 90 | 90 | 74 | 60 | 60.2 | 74 | 53 | 54 | 2.9 | 0.29 | 0.28 | 0.32 | 0.65 | 0.49 | 0.51 | 0.0 | 10.0 | 9.0 |
sec | 2000_12 | dssp | 1gak:A | 79.6 | 86 | 0 | 63 | 89 | 0 | 63 | 60.5 | 69 | 0 | 39 | 1.4 | 0.25 | 0.27 | 0.24 | 0.59 | -0.02 | 0.51 | 100.0 | 2.0 | 2.0 |
sec | 2000_12 | dssp | THIS_month:psum | 79.6 | 74 | 49 | 76 | 76 | 54 | 75 | 73.9 | 80.1 | 70.1 | 67.2 | 1.9 | 0.39 | 0.39 | 0.39 | 0.68 | 0.68 | 0.57 | 87.0 | 4.8 | 4.4 |
sec | 2000_12 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_12 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_12 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |