METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_11 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_11 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_11 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_11 | dssp | THIS_month:psum | 78.1 | 70 | 52 | 73 | 71 | 51 | 78 | 72.1 | 74.4 | 75.2 | 67.3 | 1.7 | 0.36 | 0.35 | 0.37 | 0.66 | 0.68 | 0.55 | 90 | 7.3 | 2.4 |
sec | 2000_11 | dssp | 1by6:A | 36.1 | 66 | 0 | 30 | 16 | 0 | 81 | 20.1 | 16 | 100 | 20 | 0.0 | 0.00 | 0.00 | 0.00 | -0.02 | 1.0 | -0.02 | 100.0 | 52.0 | 0.00 |
sec | 2000_11 | dssp | 1c0p:A | 79.3 | 83 | 64 | 86 | 88 | 88 | 71 | 77.4 | 85 | 82 | 69 | 0.0 | 0.47 | 0.46 | 0.49 | 0.79 | 0.68 | 0.59 | 100.0 | 1.0 | 7.0 |
sec | 2000_11 | dssp | 1dfc:A | 71.8 | 9 | 77 | 72 | 8 | 74 | 75 | 72.4 | 11 | 75 | 74 | 2.1 | 0.20 | 0.21 | 0.21 | 0.04 | 0.55 | 0.47 | 100.0 | 0.00 | 1.0 |
sec | 2000_11 | dssp | 1dh3:A | 87.3 | 91 | 0 | 57 | 93 | 0 | 50 | 56.6 | 56 | 100 | 61 | 0.0 | 0.19 | 0.20 | 0.19 | 0.46 | 1.0 | 0.46 | 100.0 | 1.0 | 0.00 |
sec | 2000_11 | dssp | 1dpu:A | 85.5 | 96 | 33 | 89 | 93 | 75 | 78 | 82.3 | 100 | 33 | 77 | 0.0 | 0.60 | 0.57 | 0.64 | 0.91 | 0.45 | 0.71 | 100.0 | 1.0 | 7.0 |
sec | 2000_11 | dssp | 1e0f:I | 78.9 | 0 | 22 | 89 | 0 | 28 | 86 | 50.9 | 100 | 22 | 54 | 0.0 | 0.01 | 0.02 | 0.02 | 1.0 | 0.13 | 0.13 | 100.0 | 0.00 | 3.0 |
sec | 2000_11 | dssp | 1e5d:A | 86.5 | 89 | 84 | 84 | 95 | 84 | 79 | 89.9 | 94 | 91 | 84 | 0.0 | 0.60 | 0.61 | 0.60 | 0.87 | 0.79 | 0.71 | 100.0 | 2.0 | 0.00 |
sec | 2000_11 | dssp | 1e5k:A | 84.6 | 93 | 80 | 80 | 77 | 84 | 91 | 92.2 | 93 | 90 | 92 | 2.6 | 0.51 | 0.52 | 0.52 | 0.77 | 0.77 | 0.74 | 0.0 | 6.0 | 1.0 |
sec | 2000_11 | dssp | 1e79:I | 66.0 | 100 | 100 | 46 | 50 | 60 | 100 | 47.2 | 100 | 80 | 32 | 0.0 | 0.39 | 0.41 | 0.37 | 0.53 | 0.75 | 0.49 | 100.0 | 29.0 | 4.0 |
sec | 2000_11 | dssp | 1e96:B | 80.4 | 89 | 0 | 70 | 84 | 0 | 80 | 78.7 | 91 | 0 | 64 | 4.8 | 0.30 | 0.30 | 0.31 | 0.59 | -0.03 | 0.64 | 100.0 | 3.0 | 0.00 |
sec | 2000_11 | dssp | 1ehx:A | 77.7 | 41 | 79 | 85 | 100 | 72 | 78 | 83.1 | 50 | 86 | 88 | 3.1 | 0.34 | 0.33 | 0.37 | 0.61 | 0.61 | 0.61 | 100.0 | 7.0 | 3.0 |
sec | 2000_11 | dssp | 1ev0:A | 87.9 | 85 | 83 | 94 | 94 | 100 | 75 | 90.6 | 85 | 100 | 87 | 0.0 | 0.66 | 0.66 | 0.67 | 0.85 | 0.88 | 0.75 | 100.0 | 3.0 | 5.0 |
sec | 2000_11 | dssp | 1f2n:A | 74.1 | 46 | 77 | 80 | 76 | 75 | 73 | 69.6 | 46 | 81 | 68 | 1.0 | 0.30 | 0.29 | 0.32 | 0.54 | 0.63 | 0.50 | 100.0 | 5.0 | 1.0 |
sec | 2000_11 | dssp | 1f5m:A | 77.3 | 83 | 72 | 73 | 91 | 67 | 70 | 80.6 | 87 | 87 | 70 | 1.7 | 0.42 | 0.42 | 0.42 | 0.80 | 0.59 | 0.55 | 100.0 | 3.0 | 1.0 |
sec | 2000_11 | dssp | 1faf:A | 87.3 | 93 | 0 | 76 | 86 | 0 | 88 | 82.1 | 93 | 100 | 67 | 0.0 | 0.43 | 0.43 | 0.45 | 0.72 | 1.0 | 0.72 | 100.0 | 5.0 | 0.00 |
sec | 2000_11 | dssp | 1fd3:A | 75.6 | 0 | 69 | 100 | 0 | 69 | 78 | 67.6 | 0 | 58 | 92 | 9.7 | 0.44 | 0.34 | 0.54 | 1.0 | 0.54 | 0.73 | 100.0 | 14.0 | 0.00 |
sec | 2000_11 | dssp | 1fi2:A | 76.1 | 52 | 78 | 82 | 78 | 71 | 78 | 60.1 | 52 | 73 | 56 | 2.4 | 0.32 | 0.31 | 0.33 | 0.58 | 0.63 | 0.56 | 100.0 | 5.0 | 2.0 |
sec | 2000_11 | dssp | 1fp3:A | 75.4 | 84 | 28 | 74 | 85 | 44 | 64 | 68.7 | 83 | 16 | 59 | 2.9 | 0.27 | 0.27 | 0.28 | 0.64 | 0.29 | 0.52 | 100.0 | 1.0 | 3.0 |
sec | 2000_11 | dssp | 1fs1:A | 78.0 | 84 | 0 | 66 | 81 | 0 | 71 | 63.8 | 66 | 100 | 60 | 0.0 | 0.21 | 0.21 | 0.21 | 0.52 | 1.0 | 0.52 | 100.0 | 2.0 | 0.00 |
sec | 2000_11 | dssp | 1fuk:A | 85.3 | 98 | 88 | 71 | 81 | 83 | 92 | 86.5 | 98 | 94 | 73 | 0.6 | 0.58 | 0.58 | 0.59 | 0.82 | 0.82 | 0.71 | 100.0 | 7.0 | 1.0 |
sec | 2000_11 | dssp | 1fx8:A | 77.6 | 73 | 0 | 90 | 97 | 0 | 64 | 79.1 | 77 | 100 | 84 | 7.0 | 0.33 | 0.41 | 0.26 | 0.58 | 1.0 | 0.66 | 0.0 | 18.0 | 7.0 |
sec | 2000_11 | dssp | 1fy7:A | 76.2 | 89 | 66 | 70 | 78 | 77 | 73 | 70.8 | 90 | 74 | 55 | 1.8 | 0.38 | 0.39 | 0.39 | 0.74 | 0.63 | 0.53 | 100.0 | 5.0 | 3.0 |
sec | 2000_11 | dssp | 1fyx:A | 71.8 | 75 | 86 | 62 | 77 | 71 | 65 | 68.2 | 59 | 92 | 71 | 0.6 | 0.34 | 0.34 | 0.34 | 0.56 | 0.74 | 0.41 | 100.0 | 1.0 | 3.0 |
sec | 2000_11 | dssp | 1g1p:A | 78.1 | 0 | 57 | 84 | 0 | 50 | 87 | 52.9 | 100 | 23 | 61 | 0.0 | 0.12 | 0.13 | 0.12 | 1.0 | 0.39 | 0.39 | 100.0 | 0.00 | 3.0 |
sec | 2000_11 | dssp | 1g25:A | 81.5 | 61 | 75 | 88 | 72 | 60 | 88 | 79.7 | 69 | 60 | 86 | 3.0 | 0.43 | 0.44 | 0.44 | 0.59 | 0.61 | 0.64 | 100.0 | 3.0 | 3.0 |
sec | 2000_11 | dssp | 1g2i:A | 80.1 | 78 | 78 | 82 | 96 | 80 | 67 | 83.6 | 90 | 83 | 75 | 0.0 | 0.50 | 0.50 | 0.51 | 0.80 | 0.72 | 0.59 | 100.0 | 7.0 | 0.00 |
sec | 2000_11 | dssp | 1g5t:A | 83.4 | 90 | 85 | 75 | 81 | 77 | 88 | 91.9 | 96 | 85 | 89 | 2.5 | 0.52 | 0.53 | 0.52 | 0.75 | 0.77 | 0.70 | 100.0 | 4.0 | 1.0 |
sec | 2000_11 | dssp | 1g61:A | 73.3 | 68 | 85 | 68 | 100 | 58 | 74 | 73.4 | 80 | 72 | 68 | 5.3 | 0.40 | 0.40 | 0.40 | 0.76 | 0.56 | 0.54 | 0.0 | 10.0 | 13.0 |
sec | 2000_11 | dssp | 1g7d:A | 83.0 | 97 | 0 | 56 | 80 | 0 | 91 | 82.4 | 100 | 100 | 57 | 0.0 | 0.34 | 0.31 | 0.38 | 0.62 | 1.0 | 0.62 | 100.0 | 13.0 | 0.00 |
sec | 2000_11 | dssp | 1qoj:A | 88.9 | 100 | 0 | 28 | 88 | 0 | 100 | 60.6 | 66 | 100 | 28 | 0.0 | 0.34 | 0.20 | 0.49 | 0.50 | 1.0 | 0.50 | 100.0 | 11.0 | 0.00 |
sec | 2000_11 | dssp | THIS_month:psum | 78.1 | 70 | 52 | 73 | 71 | 51 | 78 | 72.1 | 74.4 | 75.2 | 67.3 | 1.7 | 0.36 | 0.35 | 0.37 | 0.66 | 0.68 | 0.55 | 90 | 7.3 | 2.4 |
sec | 2000_11 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_11 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_11 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |