METHOD about: | ../../doc/explain_method2.html#PX_about_SAM-T99sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 128 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for samt99_sec in month 2000_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_08 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
sec | 2000_08 | dssp | THIS_month:psum | 74.9 | 71 | 49 | 78 | 72 | 67 | 71 | 70.9 | 78.7 | 54.5 | 68.4 | 2.8 | 0.32 | 0.31 | 0.33 | 0.67 | 0.49 | 0.52 | 75 | 3.7 | 5.9 |
sec | 2000_08 | dssp | 1c3g:A | 77.6 | 62 | 73 | 84 | 76 | 86 | 71 | 73.1 | 58 | 81 | 68 | 0.0 | 0.37 | 0.36 | 0.38 | 0.66 | 0.65 | 0.56 | 100.0 | 1.0 | 6.0 |
sec | 2000_08 | dssp | 1crz:A | 82.1 | 58 | 74 | 93 | 88 | 90 | 76 | 80.6 | 64 | 79 | 84 | 1.2 | 0.44 | 0.42 | 0.46 | 0.69 | 0.70 | 0.68 | 100.0 | 3.0 | 7.0 |
sec | 2000_08 | dssp | 1de5:A | 74.1 | 87 | 45 | 67 | 77 | 48 | 76 | 71.2 | 87 | 52 | 58 | 4.3 | 0.28 | 0.28 | 0.29 | 0.65 | 0.39 | 0.54 | 100.0 | 5.0 | 0.00 |
sec | 2000_08 | dssp | 1de6:A | 74.3 | 86 | 44 | 68 | 78 | 47 | 76 | 69.6 | 85 | 54 | 57 | 4.3 | 0.28 | 0.28 | 0.28 | 0.64 | 0.39 | 0.55 | 100.0 | 5.0 | 0.00 |
sec | 2000_08 | dssp | 1dkm:A | 76.6 | 85 | 42 | 81 | 76 | 90 | 74 | 66.9 | 80 | 51 | 59 | 3.4 | 0.35 | 0.33 | 0.37 | 0.66 | 0.57 | 0.59 | 100.0 | 4.0 | 8.0 |
sec | 2000_08 | dssp | 1dkn:A | 75.1 | 83 | 43 | 78 | 75 | 87 | 72 | 68.4 | 85 | 48 | 60 | 3.1 | 0.32 | 0.30 | 0.34 | 0.63 | 0.57 | 0.56 | 100.0 | 4.0 | 8.0 |
sec | 2000_08 | dssp | 1dko:A | 76.6 | 84 | 44 | 81 | 77 | 90 | 73 | 68.8 | 80 | 53 | 62 | 2.6 | 0.35 | 0.33 | 0.37 | 0.66 | 0.59 | 0.58 | 100.0 | 3.0 | 8.0 |
sec | 2000_08 | dssp | 1dkp:A | 76.3 | 81 | 44 | 83 | 78 | 87 | 72 | 66.7 | 80 | 49 | 59 | 3.4 | 0.33 | 0.32 | 0.35 | 0.64 | 0.58 | 0.59 | 100.0 | 1.0 | 7.0 |
sec | 2000_08 | dssp | 1dkq:A | 74.4 | 78 | 43 | 82 | 76 | 87 | 70 | 63.1 | 75 | 51 | 54 | 3.4 | 0.30 | 0.28 | 0.32 | 0.61 | 0.57 | 0.56 | 100.0 | 0.00 | 8.0 |
sec | 2000_08 | dssp | 1dw7:A | 81.7 | 100 | 68 | 82 | 73 | 81 | 85 | 91.6 | 100 | 77 | 95 | 0.0 | 0.50 | 0.51 | 0.49 | 0.82 | 0.66 | 0.62 | 100.0 | 5.0 | 4.0 |
sec | 2000_08 | dssp | 1eej:A | 84.7 | 91 | 70 | 86 | 90 | 92 | 76 | 81.8 | 84 | 78 | 81 | 0.0 | 0.57 | 0.56 | 0.58 | 0.85 | 0.75 | 0.68 | 0.0 | 0.00 | 5.0 |
sec | 2000_08 | dssp | 1eem:A | 88.2 | 94 | 90 | 79 | 87 | 86 | 89 | 86.5 | 89 | 88 | 82 | 0.0 | 0.58 | 0.58 | 0.59 | 0.80 | 0.87 | 0.74 | 100.0 | 3.0 | 0.00 |
sec | 2000_08 | dssp | 1eg3:A | 80.8 | 92 | 19 | 75 | 87 | 40 | 72 | 77.0 | 89 | 16 | 70 | 1.9 | 0.37 | 0.35 | 0.40 | 0.74 | 0.23 | 0.61 | 0.0 | 3.0 | 4.0 |
sec | 2000_08 | dssp | 1eg4:A | 80.8 | 92 | 19 | 75 | 87 | 40 | 72 | 77.0 | 89 | 16 | 70 | 1.9 | 0.37 | 0.35 | 0.40 | 0.74 | 0.23 | 0.61 | 0.0 | 3.0 | 4.0 |
sec | 2000_08 | dssp | 1emw:A | 79.5 | 93 | 59 | 84 | 62 | 76 | 89 | 88.4 | 95 | 61 | 98 | 5.6 | 0.41 | 0.42 | 0.41 | 0.70 | 0.58 | 0.70 | 100.0 | 9.0 | 5.0 |
sec | 2000_08 | dssp | 1eok:A | 64.5 | 40 | 65 | 82 | 67 | 52 | 67 | 58.9 | 41 | 68 | 71 | 7.4 | 0.18 | 0.18 | 0.19 | 0.34 | 0.50 | 0.45 | 100.0 | 14.0 | 3.0 |
sec | 2000_08 | dssp | 1eom:A | 66.8 | 46 | 65 | 83 | 72 | 54 | 68 | 60.9 | 49 | 68 | 68 | 6.3 | 0.20 | 0.20 | 0.21 | 0.41 | 0.51 | 0.47 | 100.0 | 13.0 | 2.0 |
sec | 2000_08 | dssp | 1evw:A | 58.0 | 41 | 35 | 78 | 86 | 50 | 56 | 49.7 | 51 | 44 | 51 | 1.8 | 0.14 | 0.13 | 0.17 | 0.54 | 0.21 | 0.21 | 100.0 | 9.0 | 9.0 |
sec | 2000_08 | dssp | 1evx:A | 61.1 | 43 | 38 | 81 | 81 | 52 | 60 | 53.0 | 50 | 48 | 55 | 3.0 | 0.14 | 0.13 | 0.16 | 0.53 | 0.25 | 0.29 | 100.0 | 8.0 | 8.0 |
sec | 2000_08 | dssp | 1ew4:A | 84.0 | 100 | 58 | 92 | 91 | 95 | 73 | 85.8 | 100 | 70 | 87 | 0.9 | 0.63 | 0.62 | 0.65 | 0.93 | 0.67 | 0.70 | 0.0 | 2.0 | 12.0 |
sec | 2000_08 | dssp | 1eww:A | 74.4 | 0 | 42 | 80 | 0 | 28 | 88 | 64.8 | 100 | 26 | 71 | 0.0 | 0.03 | 0.04 | 0.03 | 1.0 | 0.19 | 0.19 | 100.0 | 0.00 | 7.0 |
sec | 2000_08 | dssp | 1ezg:A | 76.8 | 0 | 21 | 93 | 0 | 50 | 79 | 53.9 | 100 | 26 | 61 | 0.0 | 0.04 | 0.03 | 0.06 | 1.0 | 0.20 | 0.20 | 100.0 | 0.00 | 13.0 |
sec | 2000_08 | dssp | 1f0k:A | 83.2 | 87 | 76 | 80 | 85 | 91 | 77 | 84.5 | 93 | 85 | 73 | 0.8 | 0.48 | 0.48 | 0.49 | 0.74 | 0.80 | 0.66 | 100.0 | 1.0 | 2.0 |
sec | 2000_08 | dssp | 1f2t:B | 60.1 | 65 | 41 | 71 | 67 | 70 | 47 | 63.0 | 66 | 51 | 69 | 11.1 | 0.14 | 0.14 | 0.15 | 0.40 | 0.41 | 0.38 | 0.0 | 1.0 | 11.0 |
sec | 2000_08 | dssp | 1f2u:A | 69.1 | 65 | 67 | 73 | 69 | 85 | 57 | 65.0 | 67 | 63 | 66 | 2.6 | 0.28 | 0.28 | 0.29 | 0.56 | 0.63 | 0.42 | 100.0 | 1.0 | 8.0 |
sec | 2000_08 | dssp | 1f2u:B | 61.4 | 69 | 40 | 70 | 67 | 73 | 49 | 66.3 | 76 | 50 | 67 | 10.3 | 0.15 | 0.15 | 0.16 | 0.44 | 0.43 | 0.38 | 0.0 | 1.0 | 13.0 |
sec | 2000_08 | dssp | 1fgx:A | 77.2 | 89 | 67 | 75 | 75 | 70 | 81 | 71.6 | 87 | 73 | 64 | 0.0 | 0.41 | 0.42 | 0.41 | 0.75 | 0.60 | 0.54 | 100.0 | 4.0 | 0.00 |
sec | 2000_08 | dssp | 1qkr:A | 79.6 | 92 | 0 | 47 | 88 | 0 | 69 | 77.4 | 86 | 0 | 56 | 1.1 | 0.30 | 0.32 | 0.29 | 0.64 | -0.02 | 0.46 | 0.0 | 2.0 | 5.0 |
sec | 2000_08 | dssp | THIS_month:psum | 74.9 | 71 | 49 | 78 | 72 | 67 | 71 | 70.9 | 78.7 | 54.5 | 68.4 | 2.8 | 0.32 | 0.31 | 0.33 | 0.67 | 0.49 | 0.52 | 75 | 3.7 | 5.9 |
sec | 2000_08 | dssp | ALL_proteins:psum | 76.6 | 74 | 48 | 71 | 69 | 59 | 74 | 71.4 | 76.1 | 66.9 | 64.7 | 2.0 | 0.35 | 0.33 | 0.36 | 0.66 | 0.63 | 0.53 | 8125.0 | 6.3 | 5.0 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.8 | 29 | 29 | 19 | 28 | 34 | 16 | 14.6 | 24.4 | 27.1 | 19.2 | 3.3 | 0.15 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 8075.4 | 8.5 | 5.7 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.87 | 2 | 2 | 1 | 2 | 3 | 1 | 1.2 | 2.1 | 2.4 | 1.7 | 0.29 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 713.7 | 0.75 | 0.50 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |