METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec5 |
METHOD url: | EVAjury_sec5 |
TYPE : | sec |
NPROT : | 135 |
NWEEKS : | 22 |
NOTE 1 : | here ALL results obtained for eva5 in month 2000_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_08 | dssp | ALL_proteins:psum | 78.3 | 73 | 51 | 77 | 74 | 60 | 75 | 73.7 | 77.8 | 70.1 | 69.2 | 1.9 | 0.45 | 0.43 | 0.47 | 0.70 | 0.65 | 0.57 | 8222.2 | 5.5 | 4.6 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.3 | 28 | 30 | 13 | 28 | 34 | 11 | 14.3 | 23.9 | 26.7 | 15.5 | 3.0 | 0.74 | 0.65 | 0.84 | 0.20 | 0.25 | 0.17 | 8170.4 | 7.2 | 5.4 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 1 | 2 | 2 | 0.95 | 1.2 | 2.0 | 2.3 | 1.3 | 0.26 | 0.06 | 0.05 | 0.07 | 0.01 | 0.02 | 0.01 | 703.1 | 0.62 | 0.47 |
sec | 2000_08 | dssp | THIS_month:psum | 78.1 | 75 | 56 | 81 | 76 | 72 | 74 | 72.6 | 83.5 | 63.0 | 68.3 | 1.9 | 0.38 | 0.37 | 0.39 | 0.73 | 0.56 | 0.56 | 82.1 | 4.2 | 5.7 |
sec | 2000_08 | dssp | 1c3g:A | 83.5 | 81 | 78 | 88 | 81 | 90 | 78 | 80.7 | 96 | 86 | 72 | 0.0 | 0.48 | 0.49 | 0.49 | 0.79 | 0.74 | 0.67 | 100.0 | 0.00 | 5.0 |
sec | 2000_08 | dssp | 1crz:A | 82.1 | 89 | 68 | 92 | 92 | 91 | 75 | 77.8 | 92 | 71 | 80 | 0.0 | 0.50 | 0.49 | 0.51 | 0.89 | 0.67 | 0.66 | 100.0 | 0.00 | 10.0 |
sec | 2000_08 | dssp | 1de5:A | 72.9 | 85 | 37 | 69 | 78 | 44 | 73 | 65.8 | 87 | 38 | 54 | 4.5 | 0.26 | 0.26 | 0.26 | 0.63 | 0.33 | 0.52 | 100.0 | 4.0 | 1.0 |
sec | 2000_08 | dssp | 1de6:A | 73.1 | 84 | 38 | 69 | 78 | 44 | 73 | 63.6 | 84 | 39 | 51 | 4.3 | 0.26 | 0.26 | 0.26 | 0.63 | 0.34 | 0.52 | 100.0 | 3.0 | 1.0 |
sec | 2000_08 | dssp | 1dkm:A | 80.5 | 83 | 55 | 87 | 87 | 88 | 73 | 72.4 | 85 | 69 | 61 | 0.7 | 0.44 | 0.42 | 0.46 | 0.75 | 0.66 | 0.63 | 100.0 | 1.0 | 6.0 |
sec | 2000_08 | dssp | 1dkn:A | 80.0 | 82 | 54 | 87 | 87 | 83 | 73 | 69.4 | 84 | 67 | 57 | 1.2 | 0.41 | 0.40 | 0.43 | 0.74 | 0.62 | 0.63 | 100.0 | 2.0 | 5.0 |
sec | 2000_08 | dssp | 1dko:A | 80.0 | 81 | 56 | 87 | 87 | 86 | 73 | 71.9 | 83 | 70 | 61 | 0.9 | 0.42 | 0.41 | 0.44 | 0.73 | 0.65 | 0.62 | 100.0 | 2.0 | 5.0 |
sec | 2000_08 | dssp | 1dkp:A | 78.3 | 76 | 55 | 88 | 87 | 87 | 70 | 67.3 | 80 | 68 | 55 | 0.9 | 0.39 | 0.38 | 0.41 | 0.70 | 0.65 | 0.60 | 100.0 | 5.0 | 5.0 |
sec | 2000_08 | dssp | 1dkq:A | 78.0 | 76 | 55 | 87 | 86 | 87 | 70 | 65.8 | 77 | 68 | 55 | 0.9 | 0.39 | 0.37 | 0.41 | 0.69 | 0.65 | 0.59 | 100.0 | 4.0 | 5.0 |
sec | 2000_08 | dssp | 1dw7:A | 77.5 | 100 | 68 | 75 | 57 | 86 | 83 | 88.2 | 100 | 81 | 88 | 0.0 | 0.46 | 0.48 | 0.45 | 0.70 | 0.70 | 0.54 | 100.0 | 11.0 | 5.0 |
sec | 2000_08 | dssp | 1eej:A | 87.5 | 92 | 76 | 89 | 92 | 92 | 80 | 86.8 | 91 | 84 | 84 | 0.0 | 0.62 | 0.61 | 0.63 | 0.88 | 0.79 | 0.74 | 0.0 | 0.00 | 4.0 |
sec | 2000_08 | dssp | 1eem:A | 90.7 | 93 | 85 | 88 | 92 | 94 | 88 | 91.5 | 91 | 90 | 91 | 0.0 | 0.64 | 0.64 | 0.65 | 0.84 | 0.89 | 0.80 | 100.0 | 0.00 | 0.00 |
sec | 2000_08 | dssp | 1eg3:A | 85.8 | 90 | 38 | 88 | 91 | 80 | 77 | 86.8 | 95 | 40 | 83 | 1.9 | 0.48 | 0.46 | 0.50 | 0.78 | 0.52 | 0.73 | 0.0 | 0.00 | 4.0 |
sec | 2000_08 | dssp | 1eg4:A | 85.8 | 90 | 38 | 88 | 91 | 80 | 77 | 86.8 | 95 | 40 | 83 | 1.9 | 0.48 | 0.46 | 0.50 | 0.78 | 0.52 | 0.73 | 0.0 | 0.00 | 4.0 |
sec | 2000_08 | dssp | 1emw:A | 83.0 | 100 | 72 | 82 | 69 | 80 | 91 | 81.5 | 100 | 87 | 75 | 2.2 | 0.50 | 0.51 | 0.49 | 0.79 | 0.68 | 0.70 | 100.0 | 7.0 | 2.0 |
sec | 2000_08 | dssp | 1eok:A | 72.3 | 48 | 81 | 87 | 87 | 57 | 72 | 65.8 | 47 | 83 | 75 | 5.6 | 0.30 | 0.30 | 0.32 | 0.53 | 0.61 | 0.57 | 100.0 | 16.0 | 6.0 |
sec | 2000_08 | dssp | 1eom:A | 73.1 | 50 | 81 | 87 | 89 | 58 | 72 | 66.7 | 50 | 83 | 75 | 4.9 | 0.32 | 0.32 | 0.33 | 0.56 | 0.62 | 0.57 | 100.0 | 15.0 | 6.0 |
sec | 2000_08 | dssp | 1evw:A | 61.7 | 45 | 45 | 78 | 70 | 62 | 60 | 53.3 | 42 | 62 | 53 | 1.8 | 0.15 | 0.14 | 0.17 | 0.48 | 0.35 | 0.28 | 100.0 | 6.0 | 8.0 |
sec | 2000_08 | dssp | 1evx:A | 64.2 | 46 | 44 | 82 | 82 | 62 | 61 | 52.3 | 44 | 64 | 50 | 1.2 | 0.19 | 0.17 | 0.21 | 0.56 | 0.36 | 0.32 | 100.0 | 8.0 | 9.0 |
sec | 2000_08 | dssp | 1ew4:A | 85.8 | 96 | 76 | 84 | 91 | 86 | 80 | 89.2 | 100 | 88 | 82 | 0.9 | 0.59 | 0.59 | 0.60 | 0.91 | 0.73 | 0.71 | 100.0 | 1.0 | 3.0 |
sec | 2000_08 | dssp | 1eww:A | 62.2 | 0 | 35 | 67 | 0 | 20 | 85 | 46.3 | 100 | 19 | 49 | 0.0 | 0.02 | 0.03 | 0.02 | 1.0 | 0.08 | 0.02 | 100.0 | 6.0 | 11.0 |
sec | 2000_08 | dssp | 1ezg:A | 75.6 | 0 | 5 | 96 | 0 | 33 | 77 | 31.3 | 100 | 7 | 37 | 0.0 | 0.00 | 0.00 | 0.01 | 1.0 | 0.04 | 0.04 | 100.0 | 0.00 | 19.0 |
sec | 2000_08 | dssp | 1f0k:A | 83.8 | 87 | 87 | 77 | 84 | 87 | 81 | 84.1 | 86 | 88 | 79 | 1.1 | 0.50 | 0.51 | 0.51 | 0.73 | 0.84 | 0.67 | 100.0 | 1.0 | 0.00 |
sec | 2000_08 | dssp | 1f2t:B | 76.2 | 90 | 53 | 76 | 75 | 95 | 67 | 79.4 | 93 | 61 | 76 | 7.6 | 0.38 | 0.37 | 0.40 | 0.66 | 0.64 | 0.60 | 0.0 | 9.0 | 12.0 |
sec | 2000_08 | dssp | 1f2u:A | 77.9 | 73 | 72 | 86 | 82 | 93 | 65 | 84.3 | 74 | 91 | 83 | 1.3 | 0.43 | 0.43 | 0.44 | 0.70 | 0.73 | 0.59 | 100.0 | 2.0 | 8.0 |
sec | 2000_08 | dssp | 1f2u:B | 74.5 | 92 | 50 | 72 | 73 | 95 | 65 | 80.2 | 96 | 57 | 78 | 7.5 | 0.36 | 0.34 | 0.38 | 0.66 | 0.61 | 0.56 | 0.0 | 11.0 | 13.0 |
sec | 2000_08 | dssp | 1fgx:A | 77.9 | 87 | 66 | 78 | 77 | 68 | 82 | 71.1 | 87 | 64 | 67 | 1.1 | 0.39 | 0.40 | 0.39 | 0.76 | 0.58 | 0.58 | 100.0 | 3.0 | 0.00 |
sec | 2000_08 | dssp | 1qkr:A | 82.9 | 93 | 0 | 58 | 90 | 0 | 75 | 74.9 | 81 | 0 | 59 | 1.1 | 0.34 | 0.36 | 0.33 | 0.68 | -0.02 | 0.56 | 100.0 | 2.0 | 3.0 |
sec | 2000_08 | dssp | THIS_month:psum | 78.1 | 75 | 56 | 81 | 76 | 72 | 74 | 72.6 | 83.5 | 63.0 | 68.3 | 1.9 | 0.38 | 0.37 | 0.39 | 0.73 | 0.56 | 0.56 | 82.1 | 4.2 | 5.7 |
sec | 2000_08 | dssp | ALL_proteins:psum | 78.3 | 73 | 51 | 77 | 74 | 60 | 75 | 73.7 | 77.8 | 70.1 | 69.2 | 1.9 | 0.45 | 0.43 | 0.47 | 0.70 | 0.65 | 0.57 | 8222.2 | 5.5 | 4.6 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.3 | 28 | 30 | 13 | 28 | 34 | 11 | 14.3 | 23.9 | 26.7 | 15.5 | 3.0 | 0.74 | 0.65 | 0.84 | 0.20 | 0.25 | 0.17 | 8170.4 | 7.2 | 5.4 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.80 | 2 | 2 | 1 | 2 | 2 | 0.95 | 1.2 | 2.0 | 2.3 | 1.3 | 0.26 | 0.06 | 0.05 | 0.07 | 0.01 | 0.02 | 0.01 | 703.1 | 0.62 | 0.47 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |