METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_08 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_08 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_08 | dssp | THIS_month:psum | 76.8 | 72 | 61 | 79 | 73 | 68 | 74 | 74.0 | 77.9 | 67.8 | 70.9 | 3.1 | 0.37 | 0.37 | 0.37 | 0.68 | 0.56 | 0.57 | 87.5 | 4 | 4.3 |
sec | 2000_08 | dssp | 1c3g:A | 83.5 | 75 | 84 | 84 | 85 | 85 | 81 | 82.6 | 100 | 89 | 72 | 0.5 | 0.46 | 0.46 | 0.47 | 0.78 | 0.72 | 0.68 | 100.0 | 1.0 | 0.00 |
sec | 2000_08 | dssp | 1c8n:A | 70.9 | 39 | 74 | 80 | 81 | 75 | 66 | 70.6 | 39 | 84 | 71 | 1.5 | 0.27 | 0.26 | 0.29 | 0.51 | 0.60 | 0.46 | 100.0 | 8.0 | 0.00 |
sec | 2000_08 | dssp | 1crz:A | 83.1 | 89 | 75 | 88 | 89 | 88 | 78 | 82.6 | 92 | 79 | 83 | 0.0 | 0.49 | 0.49 | 0.50 | 0.88 | 0.69 | 0.66 | 100.0 | 0.00 | 6.0 |
sec | 2000_08 | dssp | 1d5k:A | 79.8 | 90 | 82 | 69 | 86 | 80 | 74 | 86.2 | 100 | 90 | 73 | 0.0 | 0.49 | 0.49 | 0.49 | 0.84 | 0.69 | 0.56 | 100.0 | 1.0 | 1.0 |
sec | 2000_08 | dssp | 1de5:A | 75.5 | 87 | 47 | 70 | 78 | 57 | 76 | 69.4 | 80 | 46 | 63 | 3.5 | 0.30 | 0.29 | 0.31 | 0.66 | 0.45 | 0.56 | 100.0 | 5.0 | 2.0 |
sec | 2000_08 | dssp | 1de6:A | 75.7 | 88 | 46 | 69 | 78 | 54 | 77 | 64.7 | 80 | 47 | 52 | 3.3 | 0.30 | 0.30 | 0.31 | 0.66 | 0.44 | 0.56 | 100.0 | 5.0 | 1.0 |
sec | 2000_08 | dssp | 1dkm:A | 76.1 | 71 | 60 | 86 | 86 | 63 | 73 | 54.0 | 45 | 66 | 61 | 4.6 | 0.34 | 0.34 | 0.34 | 0.66 | 0.54 | 0.62 | 100.0 | 6.0 | 0.00 |
sec | 2000_08 | dssp | 1dkn:A | 76.1 | 71 | 62 | 85 | 86 | 63 | 73 | 53.8 | 46 | 68 | 59 | 4.3 | 0.33 | 0.33 | 0.34 | 0.66 | 0.55 | 0.61 | 100.0 | 7.0 | 0.00 |
sec | 2000_08 | dssp | 1dko:A | 76.1 | 70 | 63 | 86 | 86 | 63 | 73 | 54.0 | 45 | 69 | 62 | 4.8 | 0.33 | 0.33 | 0.34 | 0.64 | 0.56 | 0.62 | 100.0 | 7.0 | 0.00 |
sec | 2000_08 | dssp | 1dkp:A | 77.6 | 73 | 63 | 86 | 85 | 78 | 71 | 64.1 | 65 | 70 | 60 | 2.1 | 0.36 | 0.36 | 0.38 | 0.66 | 0.65 | 0.60 | 100.0 | 5.0 | 3.0 |
sec | 2000_08 | dssp | 1dkq:A | 77.8 | 74 | 63 | 86 | 85 | 78 | 71 | 65.5 | 68 | 70 | 60 | 2.1 | 0.37 | 0.36 | 0.38 | 0.67 | 0.65 | 0.61 | 100.0 | 5.0 | 3.0 |
sec | 2000_08 | dssp | 1dw7:A | 74.6 | 100 | 52 | 78 | 61 | 71 | 82 | 86.5 | 100 | 64 | 92 | 2.8 | 0.36 | 0.37 | 0.35 | 0.73 | 0.50 | 0.54 | 100.0 | 9.0 | 7.0 |
sec | 2000_08 | dssp | 1eej:A | 86.1 | 93 | 80 | 81 | 89 | 86 | 81 | 87.3 | 94 | 78 | 85 | 0.0 | 0.59 | 0.59 | 0.59 | 0.86 | 0.78 | 0.70 | 100.0 | 1.0 | 1.0 |
sec | 2000_08 | dssp | 1eem:A | 89.5 | 91 | 80 | 89 | 93 | 89 | 84 | 86.7 | 89 | 88 | 82 | 0.0 | 0.60 | 0.60 | 0.61 | 0.83 | 0.83 | 0.78 | 100.0 | 1.0 | 0.00 |
sec | 2000_08 | dssp | 1eg3:A | 81.5 | 85 | 42 | 83 | 93 | 50 | 70 | 80.1 | 91 | 40 | 69 | 1.5 | 0.41 | 0.41 | 0.41 | 0.76 | 0.41 | 0.63 | 100.0 | 5.0 | 1.0 |
sec | 2000_08 | dssp | 1eg4:A | 81.5 | 85 | 42 | 83 | 93 | 50 | 70 | 80.1 | 91 | 40 | 69 | 1.5 | 0.41 | 0.41 | 0.41 | 0.76 | 0.41 | 0.63 | 100.0 | 5.0 | 1.0 |
sec | 2000_08 | dssp | 1eiz:A | 87.8 | 91 | 72 | 96 | 93 | 97 | 78 | 94.2 | 100 | 90 | 91 | 1.6 | 0.63 | 0.62 | 0.65 | 0.88 | 0.78 | 0.79 | 0.0 | 1.0 | 7.0 |
sec | 2000_08 | dssp | 1ej0:A | 87.8 | 91 | 72 | 96 | 93 | 97 | 78 | 94.2 | 100 | 90 | 91 | 1.6 | 0.63 | 0.62 | 0.65 | 0.88 | 0.78 | 0.79 | 0.0 | 1.0 | 7.0 |
sec | 2000_08 | dssp | 1emw:A | 87.5 | 100 | 86 | 84 | 76 | 86 | 93 | 84.3 | 100 | 100 | 75 | 0.0 | 0.61 | 0.64 | 0.60 | 0.84 | 0.81 | 0.75 | 100.0 | 5.0 | 0.00 |
sec | 2000_08 | dssp | 1eok:A | 63.8 | 47 | 79 | 71 | 66 | 51 | 68 | 64.8 | 51 | 86 | 68 | 6.3 | 0.18 | 0.19 | 0.18 | 0.36 | 0.55 | 0.40 | 100.0 | 10.0 | 8.0 |
sec | 2000_08 | dssp | 1eom:A | 64.0 | 48 | 79 | 71 | 66 | 51 | 68 | 64.9 | 51 | 86 | 68 | 6.3 | 0.18 | 0.19 | 0.18 | 0.37 | 0.55 | 0.40 | 100.0 | 10.0 | 8.0 |
sec | 2000_08 | dssp | 1evw:A | 55.6 | 19 | 39 | 80 | 23 | 51 | 65 | 49.2 | 26 | 52 | 53 | 14.1 | 0.10 | 0.10 | 0.11 | 0.04 | 0.24 | 0.40 | 100.0 | 3.0 | 7.0 |
sec | 2000_08 | dssp | 1evx:A | 56.2 | 20 | 34 | 82 | 20 | 47 | 70 | 49.5 | 23 | 46 | 57 | 17.2 | 0.15 | 0.15 | 0.16 | 0.02 | 0.18 | 0.47 | 100.0 | 0.00 | 8.0 |
sec | 2000_08 | dssp | 1ew4:A | 84.0 | 96 | 70 | 84 | 91 | 85 | 76 | 87.5 | 100 | 85 | 79 | 0.9 | 0.57 | 0.57 | 0.57 | 0.91 | 0.68 | 0.68 | 100.0 | 1.0 | 5.0 |
sec | 2000_08 | dssp | 1eww:A | 62.2 | 0 | 57 | 63 | 0 | 22 | 88 | 64.0 | 100 | 40 | 67 | 0.0 | 0.02 | 0.03 | 0.02 | 1.0 | 0.15 | 0.15 | 100.0 | 0.00 | 24.0 |
sec | 2000_08 | dssp | 1ezg:A | 78.0 | 0 | 36 | 90 | 0 | 53 | 82 | 72.0 | 100 | 45 | 80 | 0.0 | 0.08 | 0.08 | 0.10 | 1.0 | 0.31 | 0.31 | 100.0 | 0.00 | 7.0 |
sec | 2000_08 | dssp | 1f0k:A | 81.2 | 86 | 83 | 73 | 84 | 77 | 78 | 81.8 | 86 | 86 | 74 | 1.1 | 0.45 | 0.46 | 0.46 | 0.72 | 0.77 | 0.61 | 100.0 | 1.0 | 1.0 |
sec | 2000_08 | dssp | 1f2t:B | 75.5 | 90 | 53 | 73 | 72 | 95 | 70 | 77.5 | 91 | 61 | 71 | 9.0 | 0.37 | 0.35 | 0.39 | 0.62 | 0.64 | 0.61 | 0.0 | 11.0 | 12.0 |
sec | 2000_08 | dssp | 1f2u:A | 81.2 | 76 | 86 | 78 | 82 | 87 | 73 | 86.6 | 78 | 94 | 82 | 1.3 | 0.46 | 0.47 | 0.47 | 0.72 | 0.78 | 0.62 | 100.0 | 2.0 | 0.00 |
sec | 2000_08 | dssp | 1f2u:B | 71.7 | 87 | 50 | 70 | 69 | 95 | 63 | 77.8 | 95 | 57 | 72 | 8.9 | 0.31 | 0.30 | 0.33 | 0.57 | 0.61 | 0.53 | 0.0 | 11.0 | 13.0 |
sec | 2000_08 | dssp | 1fgx:A | 79.4 | 84 | 62 | 83 | 81 | 75 | 79 | 72.6 | 81 | 64 | 72 | 0.3 | 0.41 | 0.41 | 0.42 | 0.77 | 0.61 | 0.59 | 100.0 | 1.0 | 3.0 |
sec | 2000_08 | dssp | 1qkr:A | 79.0 | 88 | 0 | 56 | 89 | 0 | 62 | 79.2 | 88 | 0 | 56 | 0.5 | 0.28 | 0.30 | 0.27 | 0.60 | -0.02 | 0.45 | 100.0 | 0.00 | 3.0 |
sec | 2000_08 | dssp | THIS_month:psum | 76.8 | 72 | 61 | 79 | 73 | 68 | 74 | 74.0 | 77.9 | 67.8 | 70.9 | 3.1 | 0.37 | 0.37 | 0.37 | 0.68 | 0.56 | 0.57 | 87.5 | 4 | 4.3 |
sec | 2000_08 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_08 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |