| METHOD about: | ../../doc/explain_method2.html#PX_about_PSSP |
| METHOD url: | PSSP |
| TYPE : | sec |
| NPROT : | 192 |
| NWEEKS : | 26 |
| NOTE 1 : | here ALL results obtained for pssp in month 2000_06 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2000_06 | dssp | ALL_proteins:psum | 64.2 | 56 | 45 | 66 | 62 | 42 | 63 | 59.3 | 59.1 | 62.6 | 59.3 | 6.4 | 0.20 | 0.20 | 0.19 | 0.46 | 0.48 | 0.38 | 7031.2 | 9.6 | 7.5 |
| sec | 2000_06 | dssp | ALL_proteins:sig | 10.5 | 26 | 26 | 12 | 29 | 27 | 13 | 13.5 | 25.0 | 25.9 | 15.1 | 5.3 | 0.11 | 0.11 | 0.11 | 0.24 | 0.29 | 0.15 | 6979.2 | 9.5 | 6.9 |
| sec | 2000_06 | dssp | ALL_proteins:errsig | 0.76 | 1 | 1 | 0.89 | 2 | 1 | 0.98 | 0.97 | 1.8 | 1.8 | 1.0 | 0.38 | 0.00 | 0.00 | 0.00 | 0.01 | 0.02 | 0.01 | 503.6 | 0.68 | 0.50 |
| sec | 2000_06 | dssp | THIS_month:psum | 68.2 | 51 | 73 | 76 | 95 | 42 | 71 | 70 | 51.6 | 75.6 | 81 | 9.1 | 0.29 | 0.29 | 0.3 | 0.58 | 0.44 | 0.54 | 100 | 15.3 | 12 |
| sec | 2000_06 | dssp | 1e01:A | 72.9 | 46 | 80 | 86 | 100 | 47 | 83 | 83.7 | 53 | 91 | 100 | 12.5 | 0.38 | 0.38 | 0.40 | 0.61 | 0.47 | 0.70 | 100.0 | 16.0 | 14.0 |
| sec | 2000_06 | dssp | 1e0g:A | 62.5 | 38 | 75 | 77 | 100 | 35 | 70 | 65.5 | 44 | 83 | 76 | 12.5 | 0.24 | 0.24 | 0.25 | 0.53 | 0.37 | 0.50 | 100.0 | 22.0 | 18.0 |
| sec | 2000_06 | dssp | 1e1d:A | 69.3 | 71 | 65 | 67 | 85 | 45 | 62 | 60.8 | 58 | 53 | 67 | 2.3 | 0.25 | 0.26 | 0.25 | 0.60 | 0.47 | 0.41 | 100.0 | 8.0 | 4.0 |
| sec | 2000_06 | dssp | THIS_month:psum | 68.2 | 51 | 73 | 76 | 95 | 42 | 71 | 70 | 51.6 | 75.6 | 81 | 9.1 | 0.29 | 0.29 | 0.3 | 0.58 | 0.44 | 0.54 | 100 | 15.3 | 12 |
| sec | 2000_06 | dssp | ALL_proteins:psum | 64.2 | 56 | 45 | 66 | 62 | 42 | 63 | 59.3 | 59.1 | 62.6 | 59.3 | 6.4 | 0.20 | 0.20 | 0.19 | 0.46 | 0.48 | 0.38 | 7031.2 | 9.6 | 7.5 |
| sec | 2000_06 | dssp | ALL_proteins:sig | 10.5 | 26 | 26 | 12 | 29 | 27 | 13 | 13.5 | 25.0 | 25.9 | 15.1 | 5.3 | 0.11 | 0.11 | 0.11 | 0.24 | 0.29 | 0.15 | 6979.2 | 9.5 | 6.9 |
| sec | 2000_06 | dssp | ALL_proteins:errsig | 0.76 | 1 | 1 | 0.89 | 2 | 1 | 0.98 | 0.97 | 1.8 | 1.8 | 1.0 | 0.38 | 0.00 | 0.00 | 0.00 | 0.01 | 0.02 | 0.01 | 503.6 | 0.68 | 0.50 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |