METHOD about: | ../../doc/explain_method2.html#PX_about_PSIpred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for psipred in month 2000_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_06 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_06 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_06 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
sec | 2000_06 | dssp | THIS_month:psum | 74.6 | 73 | 59 | 77 | 79 | 59 | 74 | 71.7 | 73.6 | 68.1 | 70 | 4.5 | 0.35 | 0.36 | 0.35 | 0.64 | 0.57 | 0.57 | 73.3 | 4.3 | 3.6 |
sec | 2000_06 | dssp | 1e01:A | 93.8 | 100 | 90 | 91 | 100 | 81 | 95 | 94.3 | 100 | 92 | 91 | 0.0 | 0.80 | 0.81 | 0.80 | 1.0 | 0.81 | 0.87 | 100.0 | 0.00 | 2.0 |
sec | 2000_06 | dssp | 1e0g:A | 83.3 | 83 | 87 | 81 | 100 | 63 | 81 | 77.4 | 83 | 85 | 69 | 0.0 | 0.58 | 0.59 | 0.57 | 0.87 | 0.68 | 0.66 | 100.0 | 6.0 | 6.0 |
sec | 2000_06 | dssp | 1e1d:A | 77.9 | 83 | 53 | 77 | 83 | 66 | 73 | 73.6 | 85 | 55 | 62 | 2.5 | 0.33 | 0.33 | 0.34 | 0.67 | 0.55 | 0.59 | 100.0 | 0.00 | 2.0 |
sec | 2000_06 | dssp | 1ef4:A | 83.6 | 92 | 0 | 74 | 86 | 0 | 90 | 75.6 | 100 | 100 | 58 | 0.0 | 0.46 | 0.52 | 0.42 | 0.78 | 1.0 | 0.68 | 100.0 | 3.0 | 5.0 |
sec | 2000_06 | dssp | 1ekj:A | 88.6 | 88 | 85 | 89 | 94 | 90 | 81 | 94.3 | 93 | 100 | 92 | 0.0 | 0.62 | 0.62 | 0.62 | 0.84 | 0.85 | 0.76 | 100.0 | 2.0 | 0.00 |
sec | 2000_06 | dssp | 1eul:A | 76.6 | 89 | 65 | 66 | 78 | 66 | 78 | 71.7 | 84 | 67 | 61 | 2.5 | 0.35 | 0.35 | 0.36 | 0.69 | 0.59 | 0.56 | 100.0 | 6.0 | 0.00 |
sec | 2000_06 | dssp | 1euv:A | 75.1 | 72 | 71 | 79 | 82 | 82 | 66 | 73.1 | 72 | 76 | 72 | 1.3 | 0.35 | 0.35 | 0.36 | 0.62 | 0.72 | 0.52 | 100.0 | 4.0 | 2.0 |
sec | 2000_06 | dssp | 1f15:A | 69.4 | 33 | 69 | 77 | 46 | 73 | 70 | 68.4 | 27 | 78 | 70 | 0.0 | 0.23 | 0.23 | 0.25 | 0.32 | 0.57 | 0.37 | 100.0 | 3.0 | 1.0 |
sec | 2000_06 | dssp | 1qcn:A | 69.0 | 69 | 50 | 79 | 61 | 70 | 72 | 61.6 | 65 | 51 | 65 | 6.2 | 0.22 | 0.22 | 0.23 | 0.53 | 0.47 | 0.50 | 100.0 | 3.0 | 7.0 |
sec | 2000_06 | dssp | 1qco:A | 70.9 | 73 | 57 | 76 | 70 | 65 | 73 | 65.8 | 71 | 56 | 67 | 4.3 | 0.26 | 0.26 | 0.27 | 0.62 | 0.48 | 0.50 | 100.0 | 1.0 | 3.0 |
sec | 2000_06 | dssp | 1qhn:A | 61.8 | 59 | 48 | 71 | 78 | 34 | 64 | 62.6 | 60 | 49 | 72 | 14.0 | 0.17 | 0.18 | 0.17 | 0.48 | 0.24 | 0.48 | 0.0 | 11.0 | 7.0 |
sec | 2000_06 | dssp | 1qhs:A | 65.7 | 65 | 54 | 71 | 79 | 42 | 66 | 62.5 | 64 | 51 | 65 | 10.1 | 0.21 | 0.22 | 0.21 | 0.54 | 0.34 | 0.49 | 0.0 | 7.0 | 5.0 |
sec | 2000_06 | dssp | 1qhx:A | 66.3 | 64 | 54 | 74 | 79 | 42 | 68 | 63.0 | 63 | 51 | 67 | 11.2 | 0.22 | 0.22 | 0.22 | 0.53 | 0.34 | 0.52 | 0.0 | 8.0 | 5.0 |
sec | 2000_06 | dssp | 1qhy:A | 65.7 | 63 | 54 | 74 | 81 | 42 | 65 | 62.5 | 62 | 51 | 68 | 11.2 | 0.22 | 0.22 | 0.22 | 0.52 | 0.34 | 0.51 | 0.0 | 10.0 | 5.0 |
sec | 2000_06 | dssp | 1qqj:A | 72.6 | 76 | 58 | 78 | 71 | 70 | 74 | 69.7 | 76 | 60 | 71 | 4.3 | 0.28 | 0.29 | 0.29 | 0.64 | 0.51 | 0.53 | 100.0 | 1.0 | 4.0 |
sec | 2000_06 | dssp | THIS_month:psum | 74.6 | 73 | 59 | 77 | 79 | 59 | 74 | 71.7 | 73.6 | 68.1 | 70 | 4.5 | 0.35 | 0.36 | 0.35 | 0.64 | 0.57 | 0.57 | 73.3 | 4.3 | 3.6 |
sec | 2000_06 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_06 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_06 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |