METHOD about: | ../../doc/explain_method2.html#PX_about_PSIpred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for psipred in month 2000_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_05 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
sec | 2000_05 | dssp | THIS_month:psum | 76.4 | 85 | 49 | 72 | 71 | 50 | 76 | 73.3 | 81.5 | 72.3 | 68.5 | 3.1 | 0.36 | 0.37 | 0.36 | 0.60 | 0.72 | 0.58 | 64.7 | 8.5 | 3.5 |
sec | 2000_05 | dssp | 1d9e:A | 85.0 | 93 | 73 | 82 | 87 | 91 | 79 | 88.4 | 95 | 86 | 82 | 0.3 | 0.55 | 0.55 | 0.56 | 0.83 | 0.77 | 0.68 | 0.0 | 3.0 | 4.0 |
sec | 2000_05 | dssp | 1dj0:A | 82.2 | 85 | 80 | 81 | 80 | 79 | 84 | 81.5 | 90 | 84 | 76 | 1.5 | 0.47 | 0.48 | 0.47 | 0.77 | 0.72 | 0.67 | 100.0 | 1.0 | 0.00 |
sec | 2000_05 | dssp | 1dli:A | 81.1 | 86 | 85 | 73 | 83 | 76 | 80 | 81.8 | 87 | 85 | 74 | 0.2 | 0.45 | 0.46 | 0.46 | 0.72 | 0.77 | 0.61 | 100.0 | 1.0 | 1.0 |
sec | 2000_05 | dssp | 1dlj:A | 86.1 | 90 | 83 | 82 | 88 | 81 | 85 | 85.2 | 89 | 85 | 80 | 0.4 | 0.54 | 0.54 | 0.54 | 0.80 | 0.79 | 0.72 | 100.0 | 1.0 | 0.00 |
sec | 2000_05 | dssp | 1dny:A | 88.2 | 95 | 0 | 79 | 85 | 0 | 93 | 80.3 | 100 | 100 | 64 | 0.0 | 0.49 | 0.48 | 0.50 | 0.76 | 1.0 | 0.76 | 100.0 | 6.0 | 0.00 |
sec | 2000_05 | dssp | 1dp5:B | 83.9 | 82 | 0 | 100 | 100 | 0 | 37 | 61.6 | 60 | 100 | 77 | 0.0 | 0.36 | 0.46 | 0.26 | 0.55 | 1.0 | 0.55 | 100.0 | 16.0 | 0.00 |
sec | 2000_05 | dssp | 1du2:A | 60.5 | 85 | 0 | 46 | 46 | 0 | 85 | 50.3 | 62 | 100 | 44 | 0.0 | 0.08 | 0.09 | 0.09 | 0.32 | 1.0 | 0.32 | 0.0 | 28.0 | 0.00 |
sec | 2000_05 | dssp | 1e0b:A | 47.5 | 50 | 33 | 58 | 30 | 63 | 58 | 51.8 | 56 | 33 | 65 | 19.6 | 0.07 | 0.07 | 0.08 | 0.08 | 0.28 | 0.31 | 100.0 | 16.0 | 16.0 |
sec | 2000_05 | dssp | 1edu:A | 91.3 | 92 | 100 | 87 | 98 | 40 | 81 | 95.3 | 100 | 62 | 84 | 0.0 | 0.61 | 0.65 | 0.57 | 0.84 | 0.62 | 0.78 | 100.0 | 4.0 | 2.0 |
sec | 2000_05 | dssp | 1ef1:A | 86.1 | 90 | 80 | 85 | 87 | 88 | 82 | 84.9 | 91 | 87 | 78 | 2.0 | 0.55 | 0.55 | 0.56 | 0.82 | 0.78 | 0.74 | 100.0 | 1.0 | 2.0 |
sec | 2000_05 | dssp | 1ef1:C | 73.3 | 98 | 0 | 42 | 69 | 0 | 88 | 62.0 | 92 | 0 | 34 | 0.0 | 0.26 | 0.21 | 0.32 | 0.51 | 1.0 | 0.47 | 100.0 | 23.0 | 1.0 |
sec | 2000_05 | dssp | 1ej3:A | 84.0 | 89 | 25 | 81 | 91 | 33 | 76 | 79.8 | 85 | 25 | 74 | 1.0 | 0.41 | 0.41 | 0.42 | 0.75 | 0.26 | 0.67 | 100.0 | 1.0 | 1.0 |
sec | 2000_05 | dssp | 1em2:A | 80.4 | 88 | 74 | 80 | 73 | 93 | 75 | 76.0 | 70 | 80 | 77 | 4.2 | 0.46 | 0.46 | 0.46 | 0.72 | 0.75 | 0.66 | 0.0 | 5.0 | 7.0 |
sec | 2000_05 | dssp | 1eo0:A | 74.0 | 77 | 0 | 66 | 83 | 0 | 66 | 85.7 | 87 | 100 | 82 | 5.1 | 0.19 | 0.22 | 0.17 | 0.42 | 1.0 | 0.51 | 0.0 | 5.0 | 5.0 |
sec | 2000_05 | dssp | 1eq6:A | 60.3 | 68 | 47 | 68 | 52 | 71 | 60 | 61.4 | 66 | 58 | 61 | 12.6 | 0.15 | 0.15 | 0.15 | 0.42 | 0.39 | 0.42 | 0.0 | 7.0 | 12.0 |
sec | 2000_05 | dssp | 1ewi:A | 64.0 | 84 | 89 | 50 | 29 | 65 | 94 | 51.5 | 57 | 78 | 44 | 2.6 | 0.32 | 0.36 | 0.29 | 0.39 | 0.67 | 0.46 | 0.0 | 21.0 | 8.0 |
sec | 2000_05 | dssp | 2osp:E | 72.1 | 100 | 71 | 71 | 30 | 72 | 79 | 69.7 | 100 | 67 | 69 | 3.5 | 0.23 | 0.26 | 0.22 | 0.53 | 0.49 | 0.51 | 100.0 | 6.0 | 1.0 |
sec | 2000_05 | dssp | THIS_month:psum | 76.4 | 85 | 49 | 72 | 71 | 50 | 76 | 73.3 | 81.5 | 72.3 | 68.5 | 3.1 | 0.36 | 0.37 | 0.36 | 0.60 | 0.72 | 0.58 | 64.7 | 8.5 | 3.5 |
sec | 2000_05 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |