METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_05 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_05 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_05 | dssp | THIS_month:psum | 77.2 | 85 | 50 | 75 | 72 | 52 | 78 | 74.4 | 81.2 | 73.2 | 71.5 | 3.1 | 0.38 | 0.39 | 0.38 | 0.61 | 0.74 | 0.61 | 64.7 | 8.7 | 3.4 |
sec | 2000_05 | dssp | 1d9e:A | 85.0 | 91 | 75 | 83 | 88 | 89 | 79 | 88.3 | 95 | 83 | 83 | 0.3 | 0.55 | 0.54 | 0.56 | 0.83 | 0.77 | 0.69 | 0.0 | 1.0 | 3.0 |
sec | 2000_05 | dssp | 1dj0:A | 81.8 | 85 | 82 | 79 | 77 | 82 | 84 | 79.0 | 89 | 75 | 76 | 1.1 | 0.47 | 0.48 | 0.47 | 0.75 | 0.75 | 0.65 | 100.0 | 2.0 | 0.00 |
sec | 2000_05 | dssp | 1dli:A | 83.8 | 88 | 85 | 77 | 86 | 79 | 82 | 84.5 | 90 | 85 | 78 | 0.0 | 0.51 | 0.52 | 0.51 | 0.77 | 0.79 | 0.66 | 100.0 | 1.0 | 0.00 |
sec | 2000_05 | dssp | 1dlj:A | 84.8 | 89 | 83 | 80 | 87 | 80 | 82 | 85.2 | 89 | 85 | 80 | 0.0 | 0.53 | 0.53 | 0.53 | 0.79 | 0.78 | 0.68 | 100.0 | 0.00 | 0.00 |
sec | 2000_05 | dssp | 1dny:A | 89.5 | 95 | 0 | 82 | 86 | 0 | 93 | 81.4 | 100 | 100 | 66 | 0.0 | 0.52 | 0.52 | 0.53 | 0.78 | 1.0 | 0.78 | 100.0 | 5.0 | 0.00 |
sec | 2000_05 | dssp | 1dp5:B | 74.2 | 71 | 0 | 100 | 100 | 0 | 27 | 52.3 | 51 | 100 | 61 | 0.0 | 0.25 | 0.35 | 0.17 | 0.44 | 1.0 | 0.44 | 100.0 | 25.0 | 0.00 |
sec | 2000_05 | dssp | 1du2:A | 56.6 | 92 | 0 | 36 | 44 | 0 | 90 | 52.1 | 72 | 100 | 42 | 0.0 | 0.09 | 0.09 | 0.10 | 0.31 | 1.0 | 0.31 | 0.0 | 38.0 | 0.00 |
sec | 2000_05 | dssp | 1e0b:A | 55.7 | 50 | 38 | 75 | 36 | 66 | 66 | 62.6 | 56 | 38 | 88 | 19.6 | 0.14 | 0.14 | 0.15 | 0.17 | 0.33 | 0.49 | 100.0 | 9.0 | 14.0 |
sec | 2000_05 | dssp | 1edu:A | 93.3 | 95 | 100 | 87 | 98 | 40 | 87 | 96.3 | 100 | 62 | 88 | 0.0 | 0.67 | 0.71 | 0.64 | 0.88 | 0.62 | 0.82 | 100.0 | 2.0 | 2.0 |
sec | 2000_05 | dssp | 1ef1:A | 85.4 | 90 | 82 | 81 | 84 | 91 | 83 | 85.8 | 92 | 90 | 77 | 1.7 | 0.54 | 0.54 | 0.55 | 0.79 | 0.82 | 0.72 | 100.0 | 3.0 | 2.0 |
sec | 2000_05 | dssp | 1ef1:C | 77.8 | 96 | 0 | 55 | 74 | 0 | 87 | 67.7 | 92 | 0 | 45 | 0.0 | 0.30 | 0.27 | 0.34 | 0.58 | 1.0 | 0.55 | 100.0 | 16.0 | 1.0 |
sec | 2000_05 | dssp | 1ej3:A | 87.7 | 90 | 37 | 89 | 94 | 60 | 79 | 72.9 | 71 | 37 | 81 | 0.5 | 0.51 | 0.50 | 0.52 | 0.81 | 0.45 | 0.74 | 100.0 | 2.0 | 1.0 |
sec | 2000_05 | dssp | 1em2:A | 78.5 | 91 | 67 | 79 | 73 | 91 | 73 | 76.2 | 73 | 78 | 76 | 4.6 | 0.43 | 0.43 | 0.43 | 0.74 | 0.69 | 0.63 | 0.0 | 7.0 | 9.0 |
sec | 2000_05 | dssp | 1eo0:A | 75.3 | 77 | 0 | 70 | 85 | 0 | 68 | 86.4 | 86 | 100 | 86 | 5.1 | 0.22 | 0.25 | 0.19 | 0.46 | 1.0 | 0.55 | 0.0 | 6.0 | 5.0 |
sec | 2000_05 | dssp | 1eq6:A | 64.5 | 66 | 50 | 78 | 54 | 78 | 64 | 65.1 | 68 | 62 | 65 | 12.6 | 0.20 | 0.20 | 0.21 | 0.43 | 0.47 | 0.53 | 0.0 | 5.0 | 13.0 |
sec | 2000_05 | dssp | 1ewi:A | 64.0 | 84 | 82 | 53 | 28 | 67 | 95 | 51.3 | 57 | 76 | 44 | 4.3 | 0.30 | 0.34 | 0.27 | 0.38 | 0.65 | 0.48 | 0.0 | 22.0 | 5.0 |
sec | 2000_05 | dssp | 2osp:E | 76.1 | 100 | 78 | 72 | 33 | 73 | 87 | 78.6 | 100 | 74 | 80 | 3.9 | 0.31 | 0.33 | 0.29 | 0.56 | 0.55 | 0.61 | 100.0 | 5.0 | 3.0 |
sec | 2000_05 | dssp | THIS_month:psum | 77.2 | 85 | 50 | 75 | 72 | 52 | 78 | 74.4 | 81.2 | 73.2 | 71.5 | 3.1 | 0.38 | 0.39 | 0.38 | 0.61 | 0.74 | 0.61 | 64.7 | 8.7 | 3.4 |
sec | 2000_05 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_05 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |