METHOD about: | ../../doc/explain_method2.html#PX_about_PSIpred |
METHOD url: | PSIpred |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for psipred in month 2000_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_04 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_04 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_04 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
sec | 2000_04 | dssp | THIS_month:psum | 79.2 | 83 | 56 | 76 | 85 | 59 | 74 | 77.5 | 83.7 | 77.0 | 71.9 | 1.4 | 0.42 | 0.42 | 0.42 | 0.71 | 0.69 | 0.59 | 82.6 | 4.1 | 2.4 |
sec | 2000_04 | dssp | 1b6t:A | 86.0 | 83 | 86 | 89 | 95 | 83 | 78 | 90.4 | 91 | 100 | 84 | 1.2 | 0.56 | 0.56 | 0.56 | 0.81 | 0.81 | 0.73 | 100.0 | 5.0 | 0.00 |
sec | 2000_04 | dssp | 1bsj:A | 69.9 | 69 | 57 | 79 | 97 | 63 | 59 | 65.4 | 84 | 52 | 59 | 1.8 | 0.35 | 0.34 | 0.36 | 0.75 | 0.46 | 0.44 | 0.0 | 10.0 | 2.0 |
sec | 2000_04 | dssp | 1bsk:A | 66.3 | 69 | 50 | 76 | 97 | 63 | 51 | 62.8 | 84 | 46 | 59 | 1.8 | 0.33 | 0.32 | 0.34 | 0.75 | 0.40 | 0.38 | 0.0 | 10.0 | 6.0 |
sec | 2000_04 | dssp | 1cjx:A | 75.0 | 87 | 65 | 73 | 80 | 77 | 69 | 75.4 | 85 | 73 | 70 | 2.5 | 0.38 | 0.39 | 0.39 | 0.77 | 0.58 | 0.53 | 100.0 | 2.0 | 5.0 |
sec | 2000_04 | dssp | 1d6s:A | 78.3 | 78 | 84 | 75 | 84 | 74 | 73 | 70.5 | 79 | 91 | 57 | 0.3 | 0.42 | 0.43 | 0.42 | 0.69 | 0.75 | 0.56 | 100.0 | 3.0 | 2.0 |
sec | 2000_04 | dssp | 1d8j:A | 75.3 | 83 | 71 | 67 | 73 | 71 | 78 | 68.7 | 65 | 77 | 69 | 1.2 | 0.31 | 0.32 | 0.32 | 0.58 | 0.68 | 0.52 | 100.0 | 6.0 | 0.00 |
sec | 2000_04 | dssp | 1d8k:A | 71.6 | 76 | 66 | 66 | 76 | 85 | 62 | 61.0 | 59 | 77 | 57 | 1.2 | 0.28 | 0.28 | 0.29 | 0.50 | 0.73 | 0.42 | 100.0 | 0.00 | 2.0 |
sec | 2000_04 | dssp | 1di0:A | 83.1 | 88 | 83 | 69 | 91 | 86 | 64 | 79.6 | 77 | 93 | 75 | 0.0 | 0.52 | 0.53 | 0.52 | 0.78 | 0.81 | 0.55 | 100.0 | 1.0 | 0.00 |
sec | 2000_04 | dssp | 1dkf:A | 80.6 | 86 | 33 | 72 | 93 | 14 | 68 | 77.7 | 82 | 37 | 70 | 0.9 | 0.37 | 0.40 | 0.34 | 0.72 | 0.18 | 0.57 | 0.0 | 5.0 | 3.0 |
sec | 2000_04 | dssp | 1dt8:A | 81.8 | 100 | 0 | 64 | 72 | 0 | 100 | 93.9 | 100 | 100 | 88 | 0.0 | 0.45 | 0.44 | 0.47 | 0.68 | 1.0 | 0.68 | 100.0 | 18.0 | 0.00 |
sec | 2000_04 | dssp | 1ei7:A | 73.4 | 81 | 50 | 68 | 80 | 38 | 74 | 64.0 | 69 | 34 | 61 | 3.1 | 0.26 | 0.27 | 0.26 | 0.63 | 0.37 | 0.51 | 100.0 | 0.00 | 2.0 |
sec | 2000_04 | dssp | 1ek0:A | 84.1 | 77 | 89 | 86 | 92 | 91 | 73 | 85.8 | 84 | 86 | 87 | 0.0 | 0.56 | 0.57 | 0.57 | 0.77 | 0.86 | 0.67 | 100.0 | 5.0 | 0.00 |
sec | 2000_04 | dssp | 1elq:A | 79.3 | 84 | 69 | 78 | 82 | 78 | 76 | 80.1 | 89 | 75 | 73 | 1.8 | 0.40 | 0.40 | 0.41 | 0.71 | 0.68 | 0.61 | 100.0 | 1.0 | 2.0 |
sec | 2000_04 | dssp | 1elr:A | 90.6 | 95 | 0 | 66 | 93 | 0 | 73 | 85.9 | 89 | 100 | 69 | 0.0 | 0.36 | 0.35 | 0.38 | 0.64 | 1.0 | 0.64 | 100.0 | 1.0 | 0.00 |
sec | 2000_04 | dssp | 1elu:A | 79.3 | 84 | 69 | 78 | 82 | 78 | 76 | 80.1 | 89 | 75 | 73 | 1.8 | 0.40 | 0.40 | 0.41 | 0.71 | 0.68 | 0.61 | 100.0 | 1.0 | 2.0 |
sec | 2000_04 | dssp | 1elw:A | 96.6 | 98 | 0 | 87 | 96 | 0 | 95 | 99.6 | 100 | 100 | 97 | 0.0 | 0.72 | 0.71 | 0.74 | 0.89 | 1.0 | 0.89 | 100.0 | 1.0 | 0.00 |
sec | 2000_04 | dssp | 1enu:A | 78.0 | 81 | 60 | 82 | 88 | 70 | 70 | 71.5 | 76 | 72 | 65 | 2.9 | 0.41 | 0.41 | 0.41 | 0.74 | 0.57 | 0.60 | 100.0 | 3.0 | 2.0 |
sec | 2000_04 | dssp | 1enw:A | 65.8 | 80 | 0 | 55 | 61 | 0 | 86 | 62.9 | 82 | 100 | 53 | 2.6 | 0.15 | 0.17 | 0.13 | 0.45 | 1.0 | 0.43 | 100.0 | 12.0 | 8.0 |
sec | 2000_04 | dssp | 1eqb:A | 79.8 | 82 | 73 | 78 | 92 | 58 | 76 | 77.5 | 78 | 72 | 78 | 1.9 | 0.42 | 0.43 | 0.41 | 0.77 | 0.59 | 0.62 | 100.0 | 4.0 | 3.0 |
sec | 2000_04 | dssp | 1fbn:A | 80.0 | 85 | 79 | 77 | 73 | 85 | 80 | 88.7 | 93 | 88 | 86 | 2.6 | 0.44 | 0.45 | 0.44 | 0.71 | 0.74 | 0.64 | 100.0 | 3.0 | 2.0 |
sec | 2000_04 | dssp | 1psz:A | 85.7 | 85 | 83 | 86 | 91 | 81 | 81 | 87.5 | 94 | 91 | 77 | 1.0 | 0.53 | 0.54 | 0.53 | 0.79 | 0.79 | 0.72 | 100.0 | 3.0 | 0.00 |
sec | 2000_04 | dssp | 1qa8:A | 82.8 | 90 | 64 | 89 | 86 | 92 | 77 | 77.1 | 92 | 69 | 72 | 0.6 | 0.52 | 0.51 | 0.53 | 0.83 | 0.70 | 0.67 | 100.0 | 1.0 | 8.0 |
sec | 2000_04 | dssp | 1qfl:A | 80.5 | 84 | 58 | 90 | 87 | 83 | 73 | 77.6 | 85 | 65 | 76 | 4.3 | 0.47 | 0.46 | 0.48 | 0.76 | 0.62 | 0.69 | 0.0 | 1.0 | 7.0 |
sec | 2000_04 | dssp | THIS_month:psum | 79.2 | 83 | 56 | 76 | 85 | 59 | 74 | 77.5 | 83.7 | 77.0 | 71.9 | 1.4 | 0.42 | 0.42 | 0.42 | 0.71 | 0.69 | 0.59 | 82.6 | 4.1 | 2.4 |
sec | 2000_04 | dssp | ALL_proteins:psum | 77.0 | 74 | 52 | 76 | 74 | 55 | 74 | 72.9 | 77.3 | 70.9 | 69.6 | 2.3 | 0.37 | 0.38 | 0.37 | 0.67 | 0.65 | 0.56 | 7918.3 | 5.3 | 4.3 |
sec | 2000_04 | dssp | ALL_proteins:sig | 9.5 | 26 | 31 | 12 | 27 | 33 | 12 | 13.8 | 23.2 | 26.0 | 13.9 | 3.3 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.16 | 7855.3 | 6.5 | 5.2 |
sec | 2000_04 | dssp | ALL_proteins:errsig | 0.60 | 1 | 2 | 0.76 | 1 | 2 | 0.81 | 0.88 | 1.4 | 1.6 | 0.88 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 501.8 | 0.41 | 0.33 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |