METHOD about: | ../../doc/explain_method2.html#PX_about_EVAjury_sec3 |
METHOD url: | EVAjury_sec3 |
TYPE : | sec |
NPROT : | 245 |
NWEEKS : | 35 |
NOTE 1 : | here ALL results obtained for eva3 in month 2000_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_04 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_04 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_04 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
sec | 2000_04 | dssp | THIS_month:psum | 79.8 | 83 | 58 | 76 | 85 | 63 | 74 | 78.8 | 84.7 | 79.3 | 72.6 | 1.0 | 0.43 | 0.42 | 0.43 | 0.71 | 0.73 | 0.60 | 82.6 | 3.8 | 1.9 |
sec | 2000_04 | dssp | 1b6t:A | 84.7 | 87 | 79 | 84 | 88 | 92 | 77 | 89.4 | 91 | 100 | 81 | 0.6 | 0.53 | 0.53 | 0.54 | 0.78 | 0.82 | 0.69 | 100.0 | 0.00 | 2.0 |
sec | 2000_04 | dssp | 1bsj:A | 70.5 | 71 | 68 | 70 | 87 | 67 | 61 | 66.7 | 84 | 59 | 58 | 1.8 | 0.32 | 0.32 | 0.33 | 0.69 | 0.56 | 0.42 | 0.0 | 6.0 | 0.00 |
sec | 2000_04 | dssp | 1bsk:A | 66.9 | 71 | 60 | 67 | 87 | 67 | 52 | 63.4 | 84 | 51 | 55 | 1.8 | 0.30 | 0.30 | 0.30 | 0.69 | 0.49 | 0.35 | 0.0 | 6.0 | 3.0 |
sec | 2000_04 | dssp | 1cjx:A | 74.7 | 88 | 63 | 73 | 80 | 78 | 68 | 75.0 | 84 | 71 | 71 | 2.2 | 0.38 | 0.39 | 0.39 | 0.77 | 0.58 | 0.52 | 0.0 | 3.0 | 6.0 |
sec | 2000_04 | dssp | 1d6s:A | 79.5 | 76 | 84 | 80 | 85 | 81 | 73 | 71.7 | 77 | 94 | 60 | 0.3 | 0.44 | 0.45 | 0.45 | 0.68 | 0.79 | 0.59 | 100.0 | 4.0 | 0.00 |
sec | 2000_04 | dssp | 1d8j:A | 79.0 | 83 | 85 | 72 | 79 | 75 | 79 | 83.1 | 90 | 77 | 76 | 0.0 | 0.40 | 0.41 | 0.40 | 0.65 | 0.78 | 0.57 | 100.0 | 2.0 | 1.0 |
sec | 2000_04 | dssp | 1d8k:A | 75.3 | 76 | 77 | 73 | 82 | 87 | 64 | 76.9 | 82 | 88 | 65 | 0.0 | 0.36 | 0.37 | 0.37 | 0.58 | 0.80 | 0.48 | 100.0 | 3.0 | 1.0 |
sec | 2000_04 | dssp | 1di0:A | 82.4 | 88 | 80 | 69 | 91 | 86 | 62 | 80.6 | 78 | 93 | 75 | 0.0 | 0.51 | 0.52 | 0.51 | 0.78 | 0.79 | 0.54 | 100.0 | 1.0 | 1.0 |
sec | 2000_04 | dssp | 1dkf:A | 82.0 | 88 | 33 | 72 | 88 | 50 | 69 | 76.7 | 80 | 37 | 72 | 0.0 | 0.33 | 0.33 | 0.34 | 0.65 | 0.39 | 0.58 | 100.0 | 0.00 | 0.00 |
sec | 2000_04 | dssp | 1dt8:A | 78.8 | 100 | 0 | 58 | 69 | 0 | 100 | 90.9 | 100 | 100 | 82 | 0.0 | 0.40 | 0.38 | 0.43 | 0.63 | 1.0 | 0.63 | 100.0 | 21.0 | 0.00 |
sec | 2000_04 | dssp | 1ei7:A | 69.6 | 71 | 42 | 73 | 85 | 28 | 67 | 59.7 | 62 | 35 | 59 | 3.7 | 0.24 | 0.25 | 0.23 | 0.61 | 0.27 | 0.46 | 100.0 | 8.0 | 4.0 |
sec | 2000_04 | dssp | 1ek0:A | 88.8 | 87 | 93 | 86 | 93 | 91 | 82 | 92.9 | 92 | 100 | 88 | 0.0 | 0.65 | 0.65 | 0.65 | 0.84 | 0.89 | 0.76 | 100.0 | 2.0 | 0.00 |
sec | 2000_04 | dssp | 1elq:A | 81.6 | 83 | 73 | 82 | 86 | 86 | 75 | 79.8 | 89 | 78 | 71 | 0.2 | 0.47 | 0.47 | 0.48 | 0.75 | 0.75 | 0.63 | 100.0 | 1.0 | 2.0 |
sec | 2000_04 | dssp | 1elr:A | 91.4 | 95 | 0 | 71 | 94 | 0 | 75 | 87.3 | 89 | 100 | 75 | 0.0 | 0.40 | 0.40 | 0.41 | 0.68 | 1.0 | 0.68 | 100.0 | 0.00 | 0.00 |
sec | 2000_04 | dssp | 1elu:A | 82.2 | 83 | 73 | 84 | 87 | 86 | 76 | 80.1 | 89 | 78 | 72 | 0.2 | 0.48 | 0.48 | 0.49 | 0.76 | 0.75 | 0.64 | 100.0 | 1.0 | 2.0 |
sec | 2000_04 | dssp | 1elw:A | 95.7 | 98 | 0 | 83 | 95 | 0 | 95 | 99.6 | 100 | 100 | 97 | 0.0 | 0.67 | 0.65 | 0.70 | 0.86 | 1.0 | 0.86 | 100.0 | 2.0 | 0.00 |
sec | 2000_04 | dssp | 1enu:A | 79.3 | 81 | 63 | 84 | 91 | 70 | 71 | 74.0 | 80 | 70 | 69 | 2.6 | 0.43 | 0.43 | 0.43 | 0.77 | 0.59 | 0.63 | 100.0 | 4.0 | 1.0 |
sec | 2000_04 | dssp | 1enw:A | 66.7 | 80 | 0 | 57 | 60 | 0 | 86 | 63.4 | 81 | 100 | 55 | 2.6 | 0.14 | 0.17 | 0.13 | 0.44 | 1.0 | 0.44 | 100.0 | 13.0 | 7.0 |
sec | 2000_04 | dssp | 1eqb:A | 84.4 | 84 | 78 | 86 | 93 | 73 | 78 | 80.3 | 78 | 79 | 83 | 0.9 | 0.50 | 0.51 | 0.50 | 0.80 | 0.72 | 0.70 | 100.0 | 4.0 | 0.00 |
sec | 2000_04 | dssp | 1fbn:A | 80.0 | 81 | 80 | 78 | 77 | 85 | 77 | 90.5 | 91 | 92 | 88 | 1.3 | 0.44 | 0.45 | 0.45 | 0.72 | 0.75 | 0.61 | 100.0 | 1.0 | 1.0 |
sec | 2000_04 | dssp | 1psz:A | 85.0 | 84 | 83 | 85 | 91 | 81 | 79 | 87.4 | 94 | 91 | 77 | 0.6 | 0.52 | 0.53 | 0.52 | 0.78 | 0.79 | 0.70 | 100.0 | 3.0 | 0.00 |
sec | 2000_04 | dssp | 1qa8:A | 80.0 | 78 | 66 | 89 | 91 | 83 | 73 | 68.0 | 69 | 69 | 66 | 0.6 | 0.46 | 0.45 | 0.47 | 0.79 | 0.67 | 0.62 | 100.0 | 4.0 | 5.0 |
sec | 2000_04 | dssp | 1qfl:A | 78.9 | 83 | 54 | 90 | 83 | 85 | 72 | 77.2 | 85 | 63 | 77 | 5.1 | 0.43 | 0.42 | 0.45 | 0.72 | 0.61 | 0.68 | 0.0 | 0.00 | 8.0 |
sec | 2000_04 | dssp | THIS_month:psum | 79.8 | 83 | 58 | 76 | 85 | 63 | 74 | 78.8 | 84.7 | 79.3 | 72.6 | 1.0 | 0.43 | 0.42 | 0.43 | 0.71 | 0.73 | 0.60 | 82.6 | 3.8 | 1.9 |
sec | 2000_04 | dssp | ALL_proteins:psum | 78.0 | 75 | 54 | 76 | 75 | 57 | 75 | 73.4 | 77.0 | 72.3 | 69.9 | 2.2 | 0.38 | 0.38 | 0.38 | 0.68 | 0.66 | 0.58 | 8367.3 | 5.2 | 3.9 |
sec | 2000_04 | dssp | ALL_proteins:sig | 8.9 | 25 | 31 | 13 | 26 | 32 | 11 | 13.6 | 22.8 | 25.5 | 15.0 | 3.2 | 0.15 | 0.16 | 0.15 | 0.20 | 0.24 | 0.14 | 8300.7 | 6.8 | 4.9 |
sec | 2000_04 | dssp | ALL_proteins:errsig | 0.57 | 1 | 2 | 0.83 | 1 | 2 | 0.73 | 0.87 | 1.4 | 1.6 | 0.96 | 0.20 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 530.3 | 0.43 | 0.31 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |