EVA: Detailed information for proteins added on: 2002_01_02

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_01_02	1ez4	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: LACTATE DEHYDROGENASE;	2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PENTOSUS;	H.UCHIKOBA, S.FUSHINOBU, T.WAKAGI, M.KONNO, H.TAGUCHI,
2002_01_02	1ijh	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: CHOLESTEROL OXIDASE;	2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.;	A.VRIELINK, P.I.LARIO
2002_01_02	1ijl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: PHOSPHOLIPASE A2;	2 ORGANISM_SCIENTIFIC: DEINAGKISTRODON ACUTUS;	L.GU, H.ZHANG, S.SONG, Y.ZHOU, Z.LIN
2002_01_02	1jad	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: PHOSPHOLIPASE C BETA;	2 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO;	A.U.SINGER, G.L.WALDO, T.K.HARDEN, J.SONDEK
2002_01_02	1jgk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	2 MOLECULE: CANDOXIN;	2 ORGANISM_SCIENTIFIC: BUNGARUS CANDIDUS;	R.P.VENKITAKRISHNAN, K.V.R.CHARY, M.R.KINI, G.GOVIL
2002_01_02	1jgs	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	2 MOLECULE: MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARR;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	M.N.ALEKSHUN, S.B.LEVY, T.R.MEALY, B.A.SEATON, J.F.HEAD
2002_01_02	1jgt	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: BETA-LACTAM SYNTHETASE;	2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS;	M.T.MILLER,B.O.BACHMANN,C.A.TOWNSEND,A.C.ROSENZWEIG
2002_01_02	1jh1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: MATRIX METALLOPROTEINASE 8;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	J.SCHRODER, A.HENKE, H.WENZEL, H.BRANDSTETTER, H.G.STAMMLER,
2002_01_02	1joc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	2 MOLECULE: EARLY ENDOSOMAL AUTOANTIGEN 1;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	J.J.DUMAS, E.MERITHEW, D.RAJAMANI, S.HAYES, D.LAWE, S.CORVERA,
2002_01_02	1jr8	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	E.GROSS, C.S.SEVIER, A.VALA, C.A.KAISER, D.FASS
2002_01_02	1jra	A-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	E.GROSS, C.S.SEVIER, A.VALA, C.A.KAISER, D.FASS
2002_01_02	1k2f	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE, PROTEIN BINDING	2 MOLECULE: SIAH-1A PROTEIN;	2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;	G.POLEKHINA, C.M.HOUSE, N.TRAFICANTE, J.P.MACKAY, F.RELAIX,
2002_01_02	1k7c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: RHAMNOGALACTURONAN ACETYLESTERASE;	2 ORGANISM_SCIENTIFIC: ASPERGILLUS ACULEATUS;	A.MOLGAARD, S.LARSEN
2002_01_02	1k9q	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	2 MOLECULE: 65 KDA YES-ASSOCIATED PROTEIN;	2 SYNTHETIC: YES;	J.R.PIRES, F.TAHA-NEJAD, F.TOEPERT, T.AST, U.HOFFMULLER,
2002_01_02	1k9r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	2 MOLECULE: 65 KDA YES-ASSOCIATED PROTEIN;	2 SYNTHETIC: YES;	J.R.PIRES, F.TAHA-NEJAD, F.TOEPERT, T.AST, U.HOFFMULLER,
2002_01_02	1kb0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE;	2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI;	H.J.ROZEBOOM, A.OUBRIE
2002_01_02	1kkc	A-B-X	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: MANGANESE SUPEROXIDE DISMUTASE;	2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS;	S.FLUCKIGER, P.R.E.MITTL, L.SCAPOZZA, H.FIJTEN, G.FOLKERS,
2002_01_02	1kni	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: LYSOZYME;	2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE T4;	R.H.JACOBSON, M.MATSUMURA, H.R.FABER, B.W.MATTHEWS

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field