EVA: Detailed information for proteins added on: 2001_12_26

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2001_12_26	1hlr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: ALDEHYDE OXIDOREDUCTASE;	2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO GIGAS;	J.M.REBELO, J.M.DIAS, R.HUBER, J.J.G.MOURA, M.J.ROMAO
2001_12_26	1hqz	1-3-4-5-7-8	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	2 MOLECULE: ACTIN-BINDING PROTEIN;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	B.V.STROKOPYTOV, A.A.FEDOROV, N.MAHONEY, D.G.DRUBIN, S.C.ALMO
2001_12_26	1jax	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS	2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN;	2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS;	E.WARKENTIN, B.MAMAT, R.THAUER, U.ERMLER, S.SHIMA
2001_12_26	1jay	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS	2 MOLECULE: COENZYME F420H2:NADP+ OXIDOREDUCTASE (FNO);	2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS;	E.WARKENTIN, B.MAMAT, R.THAUER, U.ERMLER, S.SHIMA
2001_12_26	1jfb	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: NITRIC-OXIDE REDUCTASE CYTOCHROME P450 55A1;	2 ORGANISM_SCIENTIFIC: FUSARIUM OXYSPORUM;	H.SHIMIZU, S.ADACHI, S.Y.PARK, Y.SHIRO
2001_12_26	1jfc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: NITRIC-OXIDE REDUCTASE CYTOCHROME P450 55A1;	2 ORGANISM_SCIENTIFIC: FUSARIUM OXYSPORUM;	H.SHIMIZU, S.ADACHI, S.Y.PARK, Y.SHIRO
2001_12_26	1jmq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	2 MOLECULE: 65 KDA YES-ASSOCIATED PROTEIN;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	J.R.PIRES, F.TAHA-NEJAD, F.TOEPERT, T.AST, U.HOFFMULLER,
2001_12_26	1jpd	X	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	2 MOLECULE: L-ALA-D/L-GLU EPIMERASE;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	A.M.GULICK,D.M.Z.SCHMIDT,J.A.GERLT,I.RAYMENT
2001_12_26	1jpm	A-C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	2 MOLECULE: L-ALA-D/L-GLU EPIMERASE;	2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS;	A.M.GULICK, D.M.Z.SCHMIDT, J.A.GERLT, I.RAYMENT
2001_12_26	1ju3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: COCAINE ESTERASE;	2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP. MB1;	N.A.LARSEN, J.M.TURNER, J.S.STEVENS, S.J.ROSSER, A.BASRAN,
2001_12_26	1ju4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: COCAINE ESTERASE;	2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP. MB1;	N.A.LARSEN, J.M.TURNER, J.S.STEVENS, S.J.ROSSER, A.BASRAN,
2001_12_26	1jvp	P	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	2 MOLECULE: CELL DIVISION PROTEIN KINASE 2;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	J.M.RONDEAU
2001_12_26	1jzq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	2 MOLECULE: ISOLEUCYL-TRNA SYNTHETASE;	2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;	T.NAKAMA, O.NUREKI, S.YOKOYAMA
2001_12_26	1jzr	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	2 MOLECULE: URE2 PROTEIN;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	L.BOUSSET, H.BELRHALI, R.MELKI, S.MORERA
2001_12_26	1jzs	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	2 MOLECULE: ISOLEUCYL-TRNA SYNTHETASE;	2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;	T.NAKAMA, O.NUREKI, S.YOKOYAMA
2001_12_26	1k0a	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	2 MOLECULE: URE2 PROTEIN;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	L.BOUSSET, H.BELRHALI, R.MELKI, S.MORERA
2001_12_26	1k0b	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	2 MOLECULE: URE2 PROTEIN;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	L.BOUSSET, H.BELRHALI, R.MELKI, S.MORERA
2001_12_26	1k0c	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	2 MOLECULE: URE2 PROTEIN;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	L.BOUSSET, H.BELRHALI, R.MELKI, S.MORERA
2001_12_26	1k0d	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	2 MOLECULE: URE2 PROTEIN;	2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;	L.BOUSSET, H.BELRHALI, R.MELKI, S.MORERA
2001_12_26	1k0r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	2 MOLECULE: NUSA;	2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS;	B.GOPAL, L.F.HAIRE, S.J.GAMBLIN, E.J.DODSON, A.N.LANE,
2001_12_26	1k6y	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	2 MOLECULE: POL POLYPROTEIN;	2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1;	J.WANG, H.LING, W.YANG, R.CRAIGIE
2001_12_26	1k7y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	2 MOLECULE: METHIONINE SYNTHASE;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	V.BANDARIAN, K.A.PATTRIDGE, B.W.LENNON, D.P.HUDDLER,
2001_12_26	1k8g	A-B-C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN/DNA	2 MOLECULE: TELOMERE-BINDING PROTEIN ALPHA SUBUNIT;	2 ORGANISM_SCIENTIFIC: OXYTRICHA NOVA;	S.CLASSEN, J.A.RUGGLES, S.C.SCHULTZ
2001_12_26	1k98	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	2 MOLECULE: METHIONINE SYNTHASE;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	V.BANDARIAN, K.A.PATTRIDGE, B.W.LENNON, D.P.HUDDLER,
2001_12_26	1k9i	A-D-H	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SUGAR BINDING PROTEIN	2 MOLECULE: MDC-SIGN1B TYPE I ISOFORM;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	H.FEINBERG, D.A.MITCHELL, K.DRICKAMER, W.I.WEIS
2001_12_26	1k9j	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SUGAR BINDING PROTEIN	2 MOLECULE: MDC-SIGN2 TYPE I ISOFORM;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	H.FEINBERG, D.A.MITCHELL, K.DRICKAMER, W.I.WEIS
2001_12_26	1kca	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	2 MOLECULE: REPRESSOR PROTEIN CI;	2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE LAMBDA;	C.E.BELL, M.LEWIS
2001_12_26	1kee	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	2 MOLECULE: CARBAMOYL-PHOSPHATE SYNTHETASE LARGE CHAIN;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	B.W.MILES, J.B.THODEN, H.M.HOLDEN, F.M.RAUSHEL
2001_12_26	1kek	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	2 MOLECULE: PYRUVATE-FERREDOXIN OXIDOREDUCTASE;	2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO AFRICANUS;	E.CHABRIERE, X.VERNEDE, B.GUIGLIARELLI, M.-H.CHRON, E.-
2001_12_26	1kgn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	2 MOLECULE: RIBONUCLEOTIDE REDUCTASE PROTEIN R2F;	2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM AMMONIAGENES;	M.HOGBOM, Y.HUQUE, B.M.SJOBERG, P.NORDLUND
2001_12_26	1kgo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	2 MOLECULE: RIBONUCLEOTIDE REDUCTASE PROTEIN R2F;	2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM AMMONIAGENES;	M.HOGBOM, Y.HUQUE, B.M.SJOBERG, P.NORDLUND
2001_12_26	1kgp	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	2 MOLECULE: RIBONUCLEOTIDE REDUCTASE PROTEIN R2F;	2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM AMMONIAGENES;	M.HOGBOM, Y.HUQUE, B.M.SJOBERG, P.NORDLUND
2001_12_26	1ki0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	2 MOLECULE: ANGIOSTATIN;	2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;	M.C.ABAD, R.K.ARNI, D.K.GRELLA, F.J.CASTELLINO, A.TULINSKY,
2001_12_26	1kke	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	2 MOLECULE: SIGMA 1 PROTEIN;	2 ORGANISM_SCIENTIFIC: REOVIRUS SP.;	J.D.CHAPPELL, A.E.PROTA, T.S.DERMODY, T.STEHLE
2001_12_26	1kmj	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	2 MOLECULE: SELENOCYSTEINE LYASE;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	C.D.LIMA
2001_12_26	1kmk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	2 MOLECULE: SELENOCYSTEINE LYASE;	2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;	C.D.LIMA

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field