| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4....,....5....,... |
| seq | DQNCDIGNITSQCQMQHKNCEDANGCDTIIEECKTSMVERCQNQEFESAAGSTTLGPQ | | | |
| dssp | ---------HHHHHHH-------------HHHHHHHHH---HHHH------------- | | | |
| jufo | ---------HHHHHHHHH----------HHHHHHHHHHHHH----------------- | +12.6 | +20.7 | +0.03 |
| phd | ----------HHH---------------EEEHHHHHHHHHH--HHHH----------- | +5.0 | +19.2 | -0.09 |
| phdpsi | ----------HHH---------------EEEHHHHHHHHHH--HHHH----------- | +3.0 | +17.5 | -0.11 |
| prof_king | ----------HHH-------------HHHHHH---HHHH------------------- | +0.9 | +3.4 | -0.19 |
| profsec | ----------HHH---------------HHHHHH---EEEEE-EEEEE---------- | -7.7 | +7.8 | -0.17 |
| prospect | ---------HHHH---------------HHHHHH--HHHHH--HHHHHHH-------- | +0.7 | +9.7 | -0.18 |
| psipred | ---------HHHHHHH---------HHHHHHHHHHHHHHHHH---------------- | +7.2 | +12.7 | -0.03 |
| samt99_sec | -----------HHHHHH-----------HHHHHHHHHHHH-----HHH---------- | +2.9 | +19.8 | -0.14 |
| scratch | ----------HHHHHH------------HHHH----HHHH-----EE----------- | +0.5 | +4.5 | -0.14 |