| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4.. |
| seq | DRDSCVDKSRCAKYGYYQECQDCCKNAGHNGGTCMFFKCKCA | | | |
| dssp | ----HHH------EE--HHHHHHHHHH----EEEE---EEE- | | | |
| apssp2 | -------HHHHHH---HHHHHHHHH-------EEEEEEEE-- | -20.1 | -19.1 | -0.15 |
| phd | -----------E--------HHHH---------EE------- | -11.3 | -23.8 | -0.07 |
| phdpsi | -----------E--------HHHH---------EE------- | -13.4 | -25.7 | -0.09 |
| prof_king | --------------------------------EEEEEEEE-- | -20.6 | -51.7 | -0.11 |
| profsec | ----------HHH--------HHH---------EEEEEE--- | -27.5 | -34.7 | -0.24 |
| prospect | ------------EEEEE-----HHHHHHHHH----------- | -24.5 | -34.1 | -0.19 |
| psipred | -------HHHHH-----HHHHHHHHH-------EEEEEEE-- | -16.1 | -18.4 | -0.15 |
| scratch | --------HHHHH---HHH-HHHHH-------EEEEEEEE-- | -21.5 | -29.7 | -0.15 |
| jufo | ----------------HHHHHHHH----------EEEEE--- | -14.3 | -25.1 | -0.07 |