| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3...., |
| seq | GCLEFWWKCNPNDDKCCRPKLKCSKLFKLCNFSSG | | | |
| dssp | -------E--------------EE----EE----- | | | |
| apssp | ---EEEE-------------------HHE------ | +6.5 | +19.8 | +0.20 |
| apssp2 | ---EEEE------------HHHHHHHHHHH----- | -20.3 | -4.5 | -0.19 |
| phd | ---HHHHHH----HHHH---------EEEEEE--- | -15.5 | -18.1 | -0.23 |
| phdpsi | ---HHHHHH----HHHH---------EEEEEE--- | -18.2 | -20.4 | -0.27 |
| prof_king | ---EEEEE-----------------EEEEEE---- | -1.8 | +0.7 | -0.26 |
| profsec | -HHHHHHH-----HHHH------------------ | -18.1 | -38.4 | -0.35 |
| prospect | ----HHHHHHHH-----------HHHHHHH----- | -17.5 | +3.4 | -0.21 |
| psipred | --EEEEEE-----------HHHHHHHHHHH----- | -21.4 | -9.4 | -0.15 |
| samt99_sec | --EEEEE---------------HHHHHHH------ | -14.7 | -6.3 | -0.19 |
| sspro2 | --EEEEE---------------HHHHHEEE----- | -8.6 | -0.7 | -0.22 |