| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4 |
| seq | EDCIPKWKGCVNRHGDCCEGLECWKRRRSFEVCVPKTPKT | | | |
| dssp | --------E------------EEEE-----EEEE------ | | | |
| apssp2 | ------HHHHH-----HH-HHHHHHH----EEE------- | -12.4 | -11.4 | -0.04 |
| jufo | -------------------HHHHHHHHH------------ | -4.7 | -16.2 | -0.20 |
| phd | --------EE--------HHH--------EEEEEE----- | +3.7 | +17.4 | -0.11 |
| phdpsi | --------EE--------HHH--------EEEEEE----- | +2.2 | +16.0 | -0.13 |
| prof_king | --------------------HHHHH----EEEE------- | +7.1 | +5.1 | +0.07 |
| profsec | --------EEE----------EEEE---EEEEEE------ | +15.1 | +24.3 | +0.22 |
| prospect | -----EE----HHHH----------------HHHH----- | -11.8 | -23.8 | -0.26 |
| psipred | ------HHHHH-------HHHHHHHH-------------- | -17.9 | -12.5 | -0.31 |
| samt99_sec | ----------------------HHH----EEEE------- | +7.5 | +2.4 | +0.06 |
| scratch | -------------------HHHHHHH---EEEE------- | -0.5 | -1.1 | -0.07 |