EVA results for 1ko6:A

DATE : 2002_09_04
TYPE : sec
NRES : 152
HEADER : TRANSFERASE
COMPND : 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP98;
SOURCE : 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
AUTHOR : A.E.HODEL, M.R.HODEL, E.R.GRIFFIS, K.A.HENNIG, G.A.RATNER,

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15.
seq	MHPAGIILTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHF
dssp	------E-----EEEE--HHHHHHH-------EE--EEEEE---EEEEE---EE----EHHHHEEEE--EEEE-----------------EEEEE----------------HHHHHHH-HHHHHHHHHHH---EEEEEEHHH-EEEEEE---
apssp	-----EEEEE--EEE----HHHHHHHHHH--HHE--EEEE-----EEEEE------------EEEE---EEEEEE--------------EEEEEE--------------------HHHHHHHHHHHHHH-------E-------EEEEEE--	-4.2	+3.5	-0.10
apssp2	-----EEE-----EE---HHHHHHHH-----EEE---EEE----EEEEE----E-----HHHEEEE---EEEEE----------------EEEEE---EE-------E------HHHHHHHHHHHHHHHH----EEEE-----EEEEEE---	+0.4	-2.2	-0.02
prof_king	----EEEEE----EE---HHHHHHHHH---EEEEEEEEEEE----EEEEE-----------EEEEE---EEEEEE---------------EEEEEEEEEE-------------------HHHHHHHHHH----EEEEE-----EEEEEEE--	-2.1	+3.7	-0.01
prospect_secstruc	-----EEEE---EEE---HHHHHHHHH-----EE--EEEE----EEEEE-------------EEEE---EEEEEE---------------EEEEEEEEEE-------------HHHHHHHHHHHHHH------EEE-------EEEEEE---	+5.5	+12.2	+0.06
psipred	-----EEEE----EEE--HHHHHHHH------EE---EEEE---EEEEE----EE----HHHEEEE---EEEEE----------------EEEEEEEEEE----------------HHHHHHHHHHHHH-----EEEEE----EEEEEE---	+3.7	+14.2	+0.06
sspro2	----EEEEE---EEE---HHHHHH-------EEE--EEEE----EEEEE---E------HHHEEEE---EEEEE----------------EEEEEE------------------HHHHHHHHHHHHHHH----EEEEE-----EEEEEE---	+8.0	+19.1	+0.15
prospect	-----EEEE---EEE---HHHHHHHHH-----EE--EEEE----EEEEE-------------EEEE---EEEEEE---------------EEEEEEEEEE-------------HHHHHHHHHHHHHH------EEE-------EEEEEE---	+5.8	+13.1	+0.07

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Oct 7, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva