| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4.. |
| seq | SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP | | | |
| dssp | --EEEEEEE------HHHHHHHHHHHHH----EEEEEE---- | | | |
| apssp | --EEEEE---------HHHHHHHHHHHH----EEEEE----- | +6.5 | +19.8 | +0.20 |
| apssp2 | --EEEEE------HHHHHHHHHHHHHHHH---EEEEE----- | +11.0 | +27.9 | +0.31 |
| jpred | ---EEEE---------HHHHHHHHHHHHH---EEEEE----- | +12.8 | +29.0 | +0.30 |
| phd | --EEEEEE------HHHHHHHHHHHHHHH--EEEEEEE---- | +20.6 | +31.5 | +0.43 |
| phdpsi | --EEEEEE------HHHHHHHHHHHHHHH--EEEEEEE---- | +17.9 | +29.2 | +0.39 |
| prof_king | --EEEEE---------HHHHHHHHHHHH---EEEEEE----- | +14.8 | +30.4 | +0.35 |
| profsec | --EEEEEE--------HHHHHHHHHHHH----EEEEE----- | +17.6 | +27.9 | +0.42 |
| prospect | --EEEEE----------HHHHHHHHHHHH---EEEEE----- | +13.8 | +30.6 | +0.30 |
| psipred | --EEEE---------HHHHHHHHHHHHHH--EEEEEEE---- | +12.3 | +22.4 | +0.30 |
| samt99_sec | --EEEEEE-------HHHHHHHHHHHHH----EEEEE | +22.6 | +30.7 | +0.57 |
| sspro2 | --EEEEE--------HHHHHHHHHHHHH----EEEEE----- | +18.5 | +30.6 | +0.48 |