| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3...., |
| seq | RGECKFTVXGRTALNTXAVQKWHFVLXGYKCEILA | | | |
| dssp | ----EEEE--EEEEEE--EEEEEEEE--EEEEEE- | | | |
| apssp | ----EEE-----HHH---HHHHHE------E---- | +3.1 | +6.8 | +0.06 |
| apssp2 | ----EEE-----------HHEEEEE---EEEEE-- | -6.0 | 0.0 | -0.03 |
| phd | --EEEEEE-----HHHHHHHHHHHEEE---EEEE- | -24.1 | -12.1 | -0.21 |
| phdpsi | --EEEEEE-----HHHHHHHHHHHEEE---EEEE- | -26.8 | -14.4 | -0.25 |
| profsec | --EEEEEEE-EEE--HHHHHHHHHH----EEEEE- | -23.8 | -15.1 | -0.26 |
| prospect | ----------HHHHHHHHHH--------------- | -46.1 | -58.0 | -0.28 |
| psipred | ---EEEEEE------HHHHEEEEEEEEEEEEEEE- | -12.8 | -19.4 | -0.29 |
| samt99_sec | ----EEEE----H--HHHHHHEEEEE---EEEEE- | -9 | +3.6 | -0.03 |
| sspro2 | ---EEEEE--HHHHHHHHHHHHHHHHH--HHHH-- | -42.9 | -35.5 | -0.12 |