EVA results for 1jkj:E

DATE : 2002_01_30
TYPE : sec
NRES : 385
HEADER : LIGASE
COMPND : 2 MOLECULE: SUCCINYL-COA SYNTHETASE ALPHA SUBUNIT;
SOURCE : 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
AUTHOR : M.E.FRASER

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18...,....19...,....20...,....21...,....22...,....23...,....24...,....25...,....26...,....27...,....28...,....29...,....30...,....31...,....32...,....33...,....34...,....35...,....36...,....37...,....38...,
seq	MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV
dssp	-E--HHHHHHHHHH-------EEEE--HHHHHHHHHHH----EEEEE------------EEEE--HHHHHHHHHHH---EE---------EE---EEEEE---EEEEEEEEEEEE----EEEEEEE------HHHHHHH-HHH-EEEE--------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--EEEEEEEEEEEE----EEE---EEEE-HHHHHH-HHHHHH--HHH--HHHHHHHH---EEEE----EEEEE--HHHHHHHHHHHHH----E-EEEE------HHHHHHHHHHHH------EEEEEEE-----HHHHHHHHHHHHHH------EEEEEE---HHHHHHHHH-----EEE---HHHHHHHHHH--
apssp	--HHHHHHHHHHHH-------------HHHHHHHHHHH----EEEEE------------EEEE--HHHHHHHHHHH---EE---------EE--EEEEE----HHHHHHE-EEE------EEEEEE-----EHHHHHH-----EEEEE--------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----EEE--EEE-----EEEE--HHH----HHHHHHHHHHHH------HHHHHHHH--EEEEE----EEEEE--HHHHHHHHHHHHH----E-EEEEE-----HHHHHHHHHHH--------EEEEE------HHHHHHHHHHHHHHH-----EEE-E-----HHHHHHHHH----EEE---HHHHHHHHHH--	+11.3	+13.3	+0.2
jpred	--HHHHHHHHHHHHH--------E---HHHHHHHHHHH----EEEEEEEE---------EEEE--HHHHHHHHHHHH---EEE----------EEEEEE-------EEEEEEEEE-----EEEEEE-----EEEHHHH-----EEEEE--------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH---EEEE---EE-----EEEEE--E-----------------------HHHHHHHH----EEE----EEEEE----HHHHHHHHHHH----------------HHHHHHHHHHHH-----EEEEEEE----HHHHHHHHHHHHHHHH-----EEEEEE----HHHHHHHHHH----EEE---HHHHHHHHHH--	+6.0	+11.4	+0.14
phd	--HHHHHHHHHHHHH------------HHHHHHHHHHH----EEEEEEEE---------EEEE---HHHHHHHHHHH--EEEEEEE------HHHHHHHHHHHHHHHHH-EEEEE----EEEEEEE----EEEEEE------EEEEEEE---------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---EEE---EEEE----EEEE----------------HHHHHHH----HHHHHHHHHHHHHHHE---EEEEE-----E-----EEE--------E--------HHHHHHHHHHHHH----EEEEEE-------EEEHHHH--EEEEEEE-EEEEEEEE----HHHHHHHHHH--HHHHHH--HHHHHHHHHHH-	-3.5	+1.9	-0.05
phdpsi	----HHHHHHHHHH-------------HHHHHHHHHH----EEEEEEEE----------EEEE--HHHHHHHHHHHH---EEEE--------EEEEEEEEE---EEEEEEEEEEE-----EEEEEE-----EEHHH--------EEEE--------HHHHHHHHHH------HHHHHHHHHHHHHHHHHH---EEEEE--EEEE---EEEEEEEEE--------HHHHHHH--------HHHHHHHH---EEEE---EEEEEE--HHHHHHHHHHHHHH---------------HHHHHHHHHHHH------EEEEEE----HHHHHHHHHHHHHHHHH----EEEEEE----HHHHHHHHHH----E-E--HHHHHHHHHHHH-	+8.0	+11.4	+0.20
prof_king	----HHHHHHHHHH--------EEE--HHHHHHHHHHH----EEEEEEE-------EEEEEE---HHHHHHHHHHHH---EEEE---------EEEEEEE-----EEEEEEEEEE-----EEEEEE-----EEEEHHH----EEEEEE--------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH---EEEEE--EEEE----EEEEEEEEE----------------------HHHHHHHH---EEEEE---EEEEE----HHHHHHHHHHH------EEEE------HHHHHHHHHHH------EEEEEEE------HHHHHHHHHHHHHHH--EEEEEEEE----HHHHHHHHHH----EEEE--HHHHHHHHHHH-	+7.5	+12.4	+0.17
profsec	----HHHHHHHHHH-------------HHHHHHHHHH-----EEEEEEEE--------EEEEE--HHHHHHHHHHHH----EE---------EEEEEEEE-----EEEEEEEEEE-----EEEEEE-----EEHHHH------EEEEE--------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH---EEEEE--EEEE----EEEEEEEEEE--------HHHHHH-------HHHHHHHH---EEEEE---EEEEE--HHHHHHHHHHHHHH---------------HHHHHHHHHHHH------EEEEEE----HHHHHHHHHHHHHHHHH-----EEEEE----HHHHHHHHHH----EEE--HHHHHHHHHHHH-	+7.2	+9.8	+0.18
psipred	----HHHHHHHHHH--------EEE--HHHHHHHHHHH----EEEEEHHH--------EEEEE--HHHHHHHHHHHH-----------------EEEEE------EEEEEEEEE-----EEEEEEE------HHHHHHH---EEEEEE--HHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---EEEEE--EEE-----EEEEEEEEEE---------------------HHHHHHHHH---EE-----EEEEE--HHHHHHHHHHHHH-------EEE------HHHHHHHHHHHH------EEEEEE------HHHHHHHHHHHHHH------EEEEE---HHHHHHHHHHH----EEE---HHHHHHHHHHH-	+8.5	+8.9	+0.18
sspro2	---HHHHHHHHHHH--------EEE--HHHHHHHHHHH----EEEE--EE--------EEEEE--HHHHHHHHHHHH---EEEE--------E-EEEEE-------EEEEEEEE-------EEEEE-----EHHHHHHH-HHHHEE-E--------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---EEEEE--EEE-----EEEEEEEEEE-----H--HHHHHH-------HHHHHHHH----EEE----EEEEE--HHHHHHHHHHHHH----------------HHHHHHHHHHHH------EEEEEE------HHHHHHHHHHHHHH-----EEEEEE----HHHHHHHHHH----EEE---HHHHHHHHHHH-	+8.0	+9.5	+0.21

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Jan 30, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva