EVA results for 1jfm:A

DATE : 2002_02_20
TYPE : sec
NRES : 174
HEADER : IMMUNE SYSTEM
COMPND : 2 MOLECULE: RETINOIC ACID EARLY TRANSCRIPT BETA;
SOURCE : 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
AUTHOR : P.LI, R.K.STRONG

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...
seq	DAHSLRCNLTIKDPTPADPLWYEAKCFVGEILILHLSNINKTMTSGDPGETANATEVKKCLTQPLKNLCQKLRNKVSNTKVDTHKTNGYPHLQVTMIYPQSQGRTPSATWEFNISDSYFFTFYTENMSWRSANDESGVIMNKWKDDGEFVKQLKFLIHECSQKMDEFLKQSKEK
dssp	---EEEEEEEE----------EEEEEEE--EEEEEEE---------------HHHHHHHHHHHHHHHHHHHHHHHHH--------------EEEEEEEE---------EEEEEE---EEEEEE----EEEE--HHHHHHHHHH--EHHHHHHHHHHHHHHHHHHHHHHHH----
apssp	-------------------HHHHHHHH-HHHHHHHHH-----E---------HHHHHHHH-----HHHHHHHH------EE--E-------EEEEEE------------EEEE----EEEEEEE-------------EEEE------HHHHHHHHHHHHE--HHHHHHHH----	-10.5	-17.4	-0.16
jpred	-----EEEEE-----------EEEEEEE---EEEEE------------------HHHHHHHH-HHHHHHHHHHHHHH--EEEE-------EEEEEEEE----------EEEEE-----EEEE-----------HHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHH-----	+11.2	+5.6	+0.27
phd	---EEEEE-E---------HHHHHHHHHHHHHE-EEHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----EE---------EEEEEEEEE---------EEEEEEE-EEEEEEEE-------------EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHH---	+4.3	+5.4	+0.06
phdpsi	----EEEEEEEE--------EEEEEEEE---EEEEE-----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEEEEEEE-----------EEE-----HHHHE-----EEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----	+6.5	+9.0	+0.16
prof_king	---EEEEEEEE---------EEEEEEEE--EEEEEE------------HHH---H--HHHH---HHHHHHHHHHHHHHHEEE--------EEEEEEEE----------EEEEE----EEEEEE----EEEEE---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----	+10.6	+1.5	+0.24
profsec	-----EEEEEE-------HHHHHHHHHH--EEE--------------------HHHHHHHH--HHHHHHHHHHHH----EE---------EEEEEEEEE---------EEEEEE--EEEEEEEE----EEE------EEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHH---	+0.7	+1.9	0.00
psipred	--EEEEEEEEEEE-------EEEEEEEE--EEEEEEE--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EEEEEEEEEEE-----EEEEEEEEE---EEEEEE----EEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----	+8.2	+16.1	+0.23
samt99_sec	---EEEEEEEEE--------EEEEEEEE---EEEEE------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEEEEE--------EEEEEE----EEEEE-----EEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--	+10.2	+20.9	+0.24
sspro2	---EEEEEEE----------HHHHHHHHHHHHHHHHHH---------------HHHHHHH----HHHHHHHHHH------------------EEEEEEE---------EEEEEE---EEEEEEE-------------EEE-------HHHHHHHHHHHHHHHHHHHHHHH----	-3.4	-3.8	-0.04

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Feb 20, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva