EVA results for 1gsv:A

DATE : 2002_02_20
TYPE : sec
NRES : 122
HEADER : PHOTOSYNTHESIS
COMPND : 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: ECTOTHIORHODOSPIRA HALOPHILA;
AUTHOR : D.M.F.VAN AALTEN, W.CRIELAARD, K.J.HELLINGWERF, L.JOSHUA-TOR

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12.
seq	VAFGSEDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAESDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQMTPTKVKVHMKKALSGDSYWVFVKRV
dssp	-------HHHHHH---HHHH-----EEEEEE---EEEEE-HHHHHHH---HHHH---EHHHHH-HHH-----HHHHHHHHHH---EEEEEEEE------EEEEEEEEE-----EEEEEEEE-
apssp	-------HHHHHHH--HHHHH----EEEEEE---EEEEE-HHH-------HHHH---EHHHHH---------HHHHHHHHHH---EEEEEEEE------EEEEEEEEE-----EEEEEEEE-	+18.2	+23.8	+0.43
jpred	-----HHHHHHHHH-----------EEEEE----EEEEE--------------E-------------------------------EEEEEEEEE------EEEEEE--------EEEEEE--	-10.4	-12.2	+0.04
phd	-----HHHHHHHHHH--------EEEEEEE-----EEEE--------------EEEEE-----------------EEEEEE-----HHHHHHEEEEE----EEHHHHHH----EEEEEEEE-	-20.8	-19.1	-0.10
phdpsi	-----HHHHHHHHH--HHHHHH----EEEE----EEEEEE-HHHHH-------EEEEHHHH--------HHHHHHHHHHE----HHHHHHHHHHH----EEEEEEEE------EEEEEEEE-	-8.0	+6.4	-0.07
prof_king	-----HHHHHHHH-----------EEEEEEE---EEEEEE------------EEE-----H-------------EEEE-------EEEEEEEEEE----EEEEEEEE------EEEEEEEE-	-8.5	-8.4	+0.02
profsec	----HHHHHHHHHH--HHHHH---EEEEEE-----EEEEE------------HHH--HHHH---------HHHHH--EEEEE--EEEEEEEEEEEEE--EEEEEEEEE-----EEEEEEEE-	-8.8	+0.5	-0.06
psipred	----HHHHHHHHH---HHHHH---EEEEEE-----EEEE-----------HHHHHHHHHHHH-------HHHHHHHHHHH----EEEEEEEEEE-----EEEEEEE-------EEEEEEE--	-3.0	+2.8	+0.01
sspro2	----HHHHHHHHH----HHH-----EEEEE-----EEEE-H-H-------HHHH-----HH----------H--HHHH-------EEEEEEEEE------EEEEEE-------EEEEEEEE-	-1.3	+3.7	+0.08

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: Feb 20, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva