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EVA sec results for: JNet month: 2001_02

METHOD about:	../../doc/explain_method.html#PX_about_JNet
METHOD url:	JNet
TYPE :	sec
NPROT :	119
NWEEKS :	34
NOTE 1 :	here ALL results obtained for jnet in month 2001_02 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2001_02 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2001_02	dssp	ALL_proteins:psum	73.2	75	80	63	68	77	70	67.7	66.4	68.7	67.5	3.0	0.31	0.31	0.31	0.65	0.57	0.53	8487.3	8.0	6.1
sec	2001_02	dssp	ALL_proteins:sig	10.5	35	37	37	40	13	14	17.1	30.7	29.0	18.2	3.9	0.16	0.16	0.16	0.27	0.29	0.19	8438.1	9.2	6.1
sec	2001_02	dssp	ALL_proteins:errsig	0.96	3	3	3	3	1	1	1.5	2.8	2.6	1.6	0.36	0.01	0.01	0.01	0.02	0.02	0.01	773.5	0.84	0.56
sec	2001_02	dssp	THIS_month:psum	67.6	50	64	42	41	73	68	60.7	63.2	59.8	59.1	3.6	0.24	0.24	0.23	0.52	0.52	0.39	80	6.5	6.2

sec	2001_02	dssp	1f32:A	74.4	75	100	68	75	78	56	64.9	84	56	49	0.0	0.47	0.47	0.47	0.80	0.60	0.47	0.0	9.0	2.0
sec	2001_02	dssp	1fgu:A	78.0	46	86	87	80	81	74	77.9	61	89	73	1.6	0.40	0.38	0.42	0.58	0.72	0.59	100.0	7.0	3.0
sec	2001_02	dssp	1fiu:A	67.8	72	74	59	46	65	69	66.6	70	56	65	5.9	0.19	0.20	0.19	0.51	0.44	0.45	100.0	1.0	3.0
sec	2001_02	dssp	1fqj:C	57.9	40	60	0	0	69	69	58.7	36	100	73	5.2	0.04	0.05	0.04	0.25	1.0	0.22	100.0	13.0	13.0
sec	2001_02	dssp	1fx2:A	76.6	77	82	77	82	75	69	72.8	75	81	65	0.4	0.40	0.41	0.41	0.68	0.73	0.52	100.0	2.0	1.0
sec	2001_02	dssp	1g47:A	55.7	0	0	21	30	78	66	34.2	0	23	42	4.2	0.08	0.07	0.09	-0.12	0.10	0.03	100.0	5.0	5.0
sec	2001_02	dssp	1g8q:A	72.2	62	97	0	0	90	59	73.9	74	100	72	3.3	0.27	0.31	0.23	0.57	1.0	0.55	0.0	23.0	5.0
sec	2001_02	dssp	1gcu:A	66.1	72	71	62	72	60	55	68.8	73	72	59	6.1	0.22	0.22	0.23	0.52	0.55	0.37	100.0	0.00	3.0
sec	2001_02	dssp	1hqm:E	71.4	62	71	0	0	79	88	59.9	59	0	61	10.2	0.30	0.34	0.27	0.49	-0.05	0.63	100.0	5.0	11.0
sec	2001_02	dssp	1i25:A	56.8	0	0	50	31	59	76	29.4	100	21	32	0.0	0.00	0.01	0.01	1.0	0.08	0.08	100.0	0.00	16.0

sec	2001_02	dssp	THIS_month:psum	67.6	50	64	42	41	73	68	60.7	63.2	59.8	59.1	3.6	0.24	0.24	0.23	0.52	0.52	0.39	80	6.5	6.2

sec	2001_02	dssp	ALL_proteins:psum	73.2	75	80	63	68	77	70	67.7	66.4	68.7	67.5	3.0	0.31	0.31	0.31	0.65	0.57	0.53	8487.3	8.0	6.1
sec	2001_02	dssp	ALL_proteins:sig	10.5	35	37	37	40	13	14	17.1	30.7	29.0	18.2	3.9	0.16	0.16	0.16	0.27	0.29	0.19	8438.1	9.2	6.1
sec	2001_02	dssp	ALL_proteins:errsig	0.96	3	3	3	3	1	1	1.5	2.8	2.6	1.6	0.36	0.01	0.01	0.01	0.02	0.02	0.01	773.5	0.84	0.56

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

All results

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