| Method | Number of proteins | Average ModZscore for all proteins | Comments |
|---|---|---|---|
| APSSP | 0 | ? | no longer tested |
| APSSP2 | 366 | 74.9 | |
| assp | ? | ? | no longer tested |
| JNet | ? | ? | no longer tested |
| JPred | 167 | 72.8 | |
| JUFO | 133 | 68.9 | |
| PHD | 373 | 71.5 | |
| PHDpsi | 370 | 72.8 | |
| PROF | ? | ? | no longer tested |
| PROF_king | 375 | 72.5 | |
| PROFsec | 373 | 75.0 | |
| Prospect | 286 | 71.4 | |
| PSIpred | 374 | 75.9 | |
| PSSP | 1 | 56.4 | |
| SABLE | 87 | 75.8 | |
| SABLE2 | 30 | 77.0 | |
| samt99_sec# | ? | ? | no longer tested |
| SAM-T99sec | 329 | 75.5 | |
| SCRATCH (SSpro3) | 168 | 75.6 | |
| sspro | ? | ? | no longer tested |
| SSpro1 | 1 | 79.1 | |
| SSpro2 | 257 | 74.3 | |
| SSpro4 | 19 | 78.0 | |
| yaspin | 40 | 66.5 |