Home   -  Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Bottom

EVA summary for category sec (Pairwise)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 438 90 method/index.html
APSSP   00method/apssp.html
APSSP2   35675method/apssp2.html
JPred   16729method/jpred.html
JUFO   13237method/jufo.html
PHD   36776method/phd.html
PHDpsi   36476method/phdpsi.html
PROF_king   36583method/prof_king.html
PROFsec   36776method/profsec.html
Prospect   28072method/prospect.html
PSIpred   36483method/psipred.html
PSSP   11method/pssp.html
SABLE   7720method/sable.html
SABLE2   203method/sable2.html
SAM-T99sec   31983method/samt99_sec.html
SCRATCH (SSpro3)   15638method/scratch.html
SSpro1   11method/sspro1.html
SSpro2   25748method/sspro2.html
  93method/sspro4.html
  114method/yaspin.html

TABLES

DISCLAIMER Any final ranking list will be frustrated in the sense that method i assessed to be better than method j in the direct pairwise comparison may be positioned worse than method j in the final ranking because of the impact of the pairwise comparisons with other methods, based on different sets of common models.

 


Comparison of secondary structure prediction methods (pairwise)


Analysis of Q3 score for Secondary Structure Prediction:
PSIpredSAM-T99secPROFsecSABLE2SCRATCH (SSpro3)SABLESSpro1SSpro2APSSP2JPredPHDpsiPROF_kingPHDProspectAPSSPPSSPJUFO
1. PSIpred 0.03 ± 7.97 [ 267] 0.96 ± 8.85 [ 317] 4.06 ± 5.36 [ 20] 1.17 ± 7.86 [ 114] 2.39 ± 7.09 [ 62]? 1.30 ± 7.93 [ 232] 1.36 ± 5.72 [ 307] 2.95 ± 7.68 [ 151] 3.36 ± 9.79 [ 314] 3.56 ± 9.17 [ 312] 4.95 ± 10.68 [ 317] 4.02 ± 11.32 [ 236] 7.45 ± 10.44 [ 210]? 7.23 ± 10.54 [ 97]
2. SAM-T99sec -0.03 ± 7.97 [ 267] 0.55 ± 8.59 [ 268] -0.41 ± 10.17 [ 20] 0.93 ± 7.36 [ 141] 1.58 ± 8.19 [ 74]? 0.89 ± 8.04 [ 161] 1.27 ± 8.46 [ 248] 2.04 ± 7.87 [ 108] 2.59 ± 9.00 [ 266] 3.46 ± 9.02 [ 268] 4.01 ± 10.14 [ 268] 4.62 ± 10.62 [ 201] 6.72 ± 10.70 [ 146]? 7.09 ± 9.87 [ 121]
3. PROFsec -0.96 ± 8.85 [ 317] -0.55 ± 8.59 [ 268] 0.34 ± 14.31 [ 20] -0.81 ± 9.54 [ 156] -0.62 ± 10.59 [ 74]? 1.05 ± 7.26 [ 194] 0.55 ± 9.68 [ 294] 3.10 ± 7.79 [ 129] 2.18 ± 6.71 [ 363] 2.52 ± 8.86 [ 312] 3.57 ± 7.83 [ 366] 3.14 ± 11.44 [ 235] 6.90 ± 10.02 [ 176]? 4.88 ± 10.77 [ 131]
4. SABLE2 -4.06 ± 5.36 [ 20] 0.41 ± 10.17 [ 20] -0.34 ± 14.31 [ 20] 1.09 ± 11.99 [ 20] 1.89 ± 7.61 [ 20]?? 2.28 ± 11.43 [ 20]? 3.09 ± 16.96 [ 20] 7.94 ± 20.16 [ 19] 3.09 ± 16.96 [ 20] 12.24 ± 21.33 [ 18]?? 8.54 ± 14.89 [ 18]
5. SCRATCH (SSpro3) -1.17 ± 7.86 [ 114] -0.93 ± 7.36 [ 141] 0.81 ± 9.54 [ 156] -1.09 ± 11.99 [ 20] 0.49 ± 9.21 [ 66]?? 0.54 ± 7.79 [ 107]? 2.69 ± 10.27 [ 155] 3.49 ± 9.13 [ 146] 3.13 ± 10.73 [ 155] 4.53 ± 13.35 [ 116]?? 5.91 ± 10.25 [ 123]
6. SABLE -2.39 ± 7.09 [ 62] -1.58 ± 8.19 [ 74] 0.62 ± 10.59 [ 74] -1.89 ± 7.61 [ 20] -0.49 ± 9.21 [ 66]?? 0.15 ± 9.55 [ 67]? 2.40 ± 11.36 [ 73] 5.32 ± 13.11 [ 68] 3.17 ± 11.85 [ 74] 5.28 ± 13.41 [ 55]?? 7.13 ± 11.47 [ 68]
7. SSpro1????????????????
8. SSpro2 -1.30 ± 7.93 [ 232] -0.89 ± 8.04 [ 161] -1.05 ± 7.26 [ 194]???? -0.02 ± 7.22 [ 231] 1.74 ± 7.35 [ 166] 1.40 ± 7.75 [ 192] 1.11 ± 7.19 [ 204] 3.61 ± 9.30 [ 194] 1.94 ± 8.98 [ 150] 5.95 ± 9.61 [ 233]??
9. APSSP2 -1.36 ± 5.72 [ 307] -1.27 ± 8.46 [ 248] -0.55 ± 9.68 [ 294] -2.28 ± 11.43 [ 20] -0.54 ± 7.79 [ 107] -0.15 ± 9.55 [ 67]? 0.02 ± 7.22 [ 231] 1.85 ± 6.86 [ 144] 1.73 ± 10.38 [ 291] 2.17 ± 8.99 [ 305] 2.90 ± 11.20 [ 294] 3.57 ± 11.88 [ 240] 6.21 ± 8.97 [ 210]? 5.89 ± 10.03 [ 94]
10. JPred -2.95 ± 7.68 [ 151] -2.04 ± 7.87 [ 108] -3.10 ± 7.79 [ 129]???? -1.74 ± 7.35 [ 166] -1.85 ± 6.86 [ 144] -0.81 ± 8.05 [ 128] -0.56 ± 7.08 [ 123] 2.68 ± 9.89 [ 129] 1.77 ± 9.86 [ 88] 4.29 ± 8.18 [ 165]??
11. PHDpsi -3.36 ± 9.79 [ 314] -2.59 ± 9.00 [ 266] -2.18 ± 6.71 [ 363] -3.09 ± 16.96 [ 20] -2.69 ± 10.27 [ 155] -2.40 ± 11.36 [ 73]? -1.40 ± 7.75 [ 192] -1.73 ± 10.38 [ 291] 0.81 ± 8.05 [ 128] 0.29 ± 8.98 [ 309] 1.30 ± 5.14 [ 363] 1.00 ± 11.46 [ 232] 4.33 ± 9.89 [ 174]? 2.94 ± 9.10 [ 130]
12. PROF_king -3.56 ± 9.17 [ 312] -3.46 ± 9.02 [ 268] -2.52 ± 8.86 [ 312] -7.94 ± 20.16 [ 19] -3.49 ± 9.13 [ 146] -5.32 ± 13.11 [ 68]? -1.11 ± 7.19 [ 204] -2.17 ± 8.99 [ 305] 0.56 ± 7.08 [ 123] -0.29 ± 8.98 [ 309] 0.75 ± 9.58 [ 312] 0.47 ± 10.86 [ 258] 5.61 ± 9.21 [ 181]? 1.75 ± 9.61 [ 125]
13. PHD -4.95 ± 10.68 [ 317] -4.01 ± 10.14 [ 268] -3.57 ± 7.83 [ 366] -3.09 ± 16.96 [ 20] -3.13 ± 10.73 [ 155] -3.17 ± 11.85 [ 74]? -3.61 ± 9.30 [ 194] -2.90 ± 11.20 [ 294] -2.68 ± 9.89 [ 129] -1.30 ± 5.14 [ 363] -0.75 ± 9.58 [ 312] -0.10 ± 12.23 [ 236] 1.94 ± 9.91 [ 176]? 2.63 ± 9.29 [ 131]
14. Prospect -4.02 ± 11.32 [ 236] -4.62 ± 10.62 [ 201] -3.14 ± 11.44 [ 235]-12.24 ± 21.33 [ 18] -4.53 ± 13.35 [ 116] -5.28 ± 13.41 [ 55]? -1.94 ± 8.98 [ 150] -3.57 ± 11.88 [ 240] -1.77 ± 9.86 [ 88] -1.00 ± 11.46 [ 232] -0.47 ± 10.86 [ 258] 0.10 ± 12.23 [ 236] 3.98 ± 12.03 [ 132]? 0.82 ± 12.23 [ 114]
15. APSSP -7.45 ± 10.44 [ 210] -6.72 ± 10.70 [ 146] -6.90 ± 10.02 [ 176]???? -5.95 ± 9.61 [ 233] -6.21 ± 8.97 [ 210] -4.29 ± 8.18 [ 165] -4.33 ± 9.89 [ 174] -5.61 ± 9.21 [ 181] -1.94 ± 9.91 [ 176] -3.98 ± 12.03 [ 132]??
16. PSSP????????????????
17. JUFO -7.23 ± 10.54 [ 97] -7.09 ± 9.87 [ 121] -4.88 ± 10.77 [ 131] -8.54 ± 14.89 [ 18] -5.91 ± 10.25 [ 123] -7.13 ± 11.47 [ 68]?? -5.89 ± 10.03 [ 94]? -2.94 ± 9.10 [ 130] -1.75 ± 9.61 [ 125] -2.63 ± 9.29 [ 131] -0.82 ± 12.23 [ 114]??

Analysis of sov score for Secondary Structure Prediction:
Home   -   Secondary structure  Comparative modelling  Contacts  Threading   - search   - FTP   - Mirrors    -   Top