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EVA summary for category sec (Pairwise)

Contents

About secondary structure prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 334 65 method/index.html
APSSP   00method/apssp.html
APSSP2   28258method/apssp2.html
JPred   16729method/jpred.html
JUFO   4213method/jufo.html
PHD   26652method/phd.html
PHDpsi   26452method/phdpsi.html
PROF_king   27060method/prof_king.html
PROFsec   26652method/profsec.html
Prospect   20350method/prospect.html
PSIpred   28762method/psipred.html
SAM-T99sec   21960method/samt99_sec.html
SCRATCH (SSpro3)   6315method/scratch.html
SSpro2   25748method/sspro2.html

TABLES

DISCLAIMER Any final ranking list will be frustrated in the sense that method i assessed to be better than method j in the direct pairwise comparison may be positioned worse than method j in the final ranking because of the impact of the pairwise comparisons with other methods, based on different sets of common models.

 


Comparison of secondary structure prediction methods (pairwise)


Analysis of Q3 score for Secondary Structure Prediction:
PSIpredSAM-T99secPROFsecAPSSP2SCRATCH (SSpro3)SSpro1SSpro2PROF_kingJPredPHDpsiProspectPHDJUFOPSSPAPSSP
1. PSIpred -0.00 ± 8.00 [ 191] 0.62 ± 8.42 [ 241] 1.01 ± 4.59 [ 247] 0.52 ± 6.18 [ 46]? 1.30 ± 7.93 [ 232] 2.72 ± 7.55 [ 236] 2.95 ± 7.68 [ 151] 3.09 ± 9.10 [ 239] 2.98 ± 9.19 [ 174] 4.97 ± 10.28 [ 241] 4.01 ± 6.76 [ 30]? 7.45 ± 10.44 [ 210]
2. SAM-T99sec 0.00 ± 8.00 [ 191] -0.11 ± 8.07 [ 169] 0.80 ± 7.67 [ 175] 1.61 ± 6.91 [ 50]? 0.89 ± 8.04 [ 161] 2.26 ± 7.74 [ 175] 2.04 ± 7.87 [ 108] 2.15 ± 8.09 [ 168] 3.43 ± 9.76 [ 126] 4.07 ± 9.80 [ 169] 5.98 ± 6.97 [ 33]? 6.72 ± 10.70 [ 146]
3. PROFsec -0.62 ± 8.42 [ 241] 0.11 ± 8.07 [ 169] 0.48 ± 8.53 [ 221] -1.17 ± 7.72 [ 63]? 1.05 ± 7.26 [ 194] 1.85 ± 6.99 [ 218] 3.10 ± 7.79 [ 129] 2.30 ± 5.95 [ 264] 2.44 ± 9.50 [ 159] 4.02 ± 7.49 [ 266] 2.62 ± 9.66 [ 42]? 6.90 ± 10.02 [ 176]
4. APSSP2 -1.01 ± 4.59 [ 247] -0.80 ± 7.67 [ 175] -0.48 ± 8.53 [ 221] 0.17 ± 6.04 [ 42]? 0.02 ± 7.22 [ 231] 1.71 ± 8.34 [ 238] 1.85 ± 6.86 [ 144] 2.03 ± 9.59 [ 219] 3.02 ± 10.69 [ 186] 3.42 ± 10.49 [ 221] 4.82 ± 6.82 [ 29]? 6.21 ± 8.97 [ 210]
5. SCRATCH (SSpro3) -0.52 ± 6.18 [ 46] -1.61 ± 6.91 [ 50] 1.17 ± 7.72 [ 63] -0.17 ± 6.04 [ 42]?? 2.26 ± 7.55 [ 60]? 3.07 ± 7.95 [ 63] 2.86 ± 12.09 [ 47] 3.21 ± 8.23 [ 63] 4.18 ± 6.83 [ 42]??
6. SSpro1??????????????
7. SSpro2 -1.30 ± 7.93 [ 232] -0.89 ± 8.04 [ 161] -1.05 ± 7.26 [ 194] -0.02 ± 7.22 [ 231]?? 1.11 ± 7.19 [ 204] 1.74 ± 7.35 [ 166] 1.40 ± 7.75 [ 192] 1.94 ± 8.98 [ 150] 3.61 ± 9.30 [ 194]?? 5.95 ± 9.61 [ 233]
8. PROF_king -2.72 ± 7.55 [ 236] -2.26 ± 7.74 [ 175] -1.85 ± 6.99 [ 218] -1.71 ± 8.34 [ 238] -2.26 ± 7.55 [ 60]? -1.11 ± 7.19 [ 204] 0.56 ± 7.08 [ 123] 0.40 ± 7.55 [ 216] 0.72 ± 10.05 [ 184] 1.81 ± 8.28 [ 218] 2.18 ± 8.04 [ 41]? 5.61 ± 9.21 [ 181]
9. JPred -2.95 ± 7.68 [ 151] -2.04 ± 7.87 [ 108] -3.10 ± 7.79 [ 129] -1.85 ± 6.86 [ 144]?? -1.74 ± 7.35 [ 166] -0.56 ± 7.08 [ 123] -0.81 ± 8.05 [ 128] 1.77 ± 9.86 [ 88] 2.68 ± 9.89 [ 129]?? 4.29 ± 8.18 [ 165]
10. PHDpsi -3.09 ± 9.10 [ 239] -2.15 ± 8.09 [ 168] -2.30 ± 5.95 [ 264] -2.03 ± 9.59 [ 219] -3.07 ± 7.95 [ 63]? -1.40 ± 7.75 [ 192] -0.40 ± 7.55 [ 216] 0.81 ± 8.05 [ 128] 0.19 ± 9.97 [ 157] 1.72 ± 5.89 [ 264] 1.40 ± 6.75 [ 42]? 4.33 ± 9.89 [ 174]
11. Prospect -2.98 ± 9.19 [ 174] -3.43 ± 9.76 [ 126] -2.44 ± 9.50 [ 159] -3.02 ± 10.69 [ 186] -2.86 ± 12.09 [ 47]? -1.94 ± 8.98 [ 150] -0.72 ± 10.05 [ 184] -1.77 ± 9.86 [ 88] -0.19 ± 9.97 [ 157] 1.05 ± 10.88 [ 159] 1.13 ± 12.56 [ 37]? 3.98 ± 12.03 [ 132]
12. PHD -4.97 ± 10.28 [ 241] -4.07 ± 9.80 [ 169] -4.02 ± 7.49 [ 266] -3.42 ± 10.49 [ 221] -3.21 ± 8.23 [ 63]? -3.61 ± 9.30 [ 194] -1.81 ± 8.28 [ 218] -2.68 ± 9.89 [ 129] -1.72 ± 5.89 [ 264] -1.05 ± 10.88 [ 159] 1.17 ± 7.49 [ 42]? 1.94 ± 9.91 [ 176]
13. JUFO -4.01 ± 6.76 [ 30] -5.98 ± 6.97 [ 33] -2.62 ± 9.66 [ 42] -4.82 ± 6.82 [ 29] -4.18 ± 6.83 [ 42]?? -2.18 ± 8.04 [ 41]? -1.40 ± 6.75 [ 42] -1.13 ± 12.56 [ 37] -1.17 ± 7.49 [ 42]??
14. PSSP??????????????
15. APSSP -7.45 ± 10.44 [ 210] -6.72 ± 10.70 [ 146] -6.90 ± 10.02 [ 176] -6.21 ± 8.97 [ 210]?? -5.95 ± 9.61 [ 233] -5.61 ± 9.21 [ 181] -4.29 ± 8.18 [ 165] -4.33 ± 9.89 [ 174] -3.98 ± 12.03 [ 132] -1.94 ± 9.91 [ 176]??

Analysis of sov score for Secondary Structure Prediction:
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