EVA: Detailed information for proteins added on: 2003_11_05

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_11_05	1ujl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY H MEMBER 2; CHAIN: A; FRAGMENT: RESIDUES 1-42; SYNONYM: HERG K+ CHANNEL S5-P EXTRACELLULAR LINKER, ETHER- A-GO-GO RELATED GENE POTASSIUM CHANNEL 1, H-ERG, ERG1, ETHER-A-GO-GO RELATED PROTEIN 1, EAG RELATED PROTEIN 1, EAG HOMOLOG; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).	A.M.TORRES,P.S.BANSAL,M.SUNDE,C.E.CLARKE,J.A.BURSILL, D.J.SMITH,A.BAUSKIN,S.N.BREIT,T.J.CAMPBELL,P.F.ALEWOOD, P.W.KUCHEL,J.I.VANDENBERG
2003_11_05	1upt	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	COMPLEX (GTPASE/GOLGIN)	MOLECULE: GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A MEMBER 4; SYNONYM: TRANS-GOLGI P230, GOLGIN-245, 72.1 PROTEIN, 256 KDA GOLGIN; CHAIN: B, D, F, H; FRAGMENT: GRIP DOMAIN RESIDUES 2170-2228; ENGINEERED: YES; MOLECULE: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 1; SYNONYM: ARL1; CHAIN: A, C, E, G; FRAGMENT: RESIDUES 15-181	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	B.PANIC,O.PERISIC,D.B.VEPRINTSEV,R.L.WILLIAMS,S.MUNRO
2003_11_05	1uqv	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: STE50 PROTEIN; CHAIN: A; FRAGMENT: SAM DOMAIN, RESIDUES 27-108; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST;	S.J.GRIMSHAW,H.R.MOTT,K.M.STOTT,P.R.NIELSEN,K.A.EVETTS, L.J.HOPKINS,D.NIETLISPACH,D.OWEN

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field