EVA: Detailed information for proteins added on: 2003_07_15

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_07_15	1h3z	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	NUCLEAR PROTEIN	MOLECULE: HYPOTHETICAL 62.8 KDA PROTEIN C215.07C; CHAIN: A; FRAGMENT: PWWP DOMAIN, RESIDUES 118-225; ENGINEERED: YES	SCHIZOSACCHAROMYCES POMBE; FISSION YEAST; OTHER_DETAILS: SYNTHETIC GENE	L.M.SLATER,M.D.ALLEN,M.BYCROFT
2003_07_15	1iuk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL PROTEIN TT1466; CHAIN: A; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA;	T.WADA,M.SHIROUZU,S.-Y.PARK,J.R.TAME,S.KURAMITSU,S.YOKOYAMA
2003_07_15	1iwl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN TRANSPORT	MOLECULE: OUTER-MEMBRANE LIPOPROTEINS CARRIER PROTEIN; CHAIN: A; SYNONYM: P20; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	K.TAKEDA,H.MIYATAKE,N.YOKOTA,S.MATSUYAMA,H.TOKUDA,K.MIKI
2003_07_15	1ng7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: GENOME POLYPROTEIN [CORE PROTEIN P3A]; CHAIN: A, B; FRAGMENT: POLIOVIRUS 3A-N; SYNONYM: POLIOVIRUS 3A-N; ENGINEERED: YES	POLIOVIRUS TYPE 1; STRAIN MAHONEY; GENE: 3A;	D.M.STRAUSS,L.W.GLUSTROM,D.S.WUTTKE
2003_07_15	1oe4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE/COMPLEX	MOLECULE: SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE; SYNONYM: SMUG1; CHAIN: A, B; ENGINEERED: YES; MOLECULE: 5'-D(CPCPCPGPTPGPAPGPTPCP CPG)-3'; CHAIN: E; ENGINEERED: YES; MOLECULE: 5'-D(CPGPGPAPCPTPUPAPCPGP GPG)-3'; CHAIN: F; ENGINEERED: YES	XENOPUS LAEVIS; AFRICAN CLAWED FROG; SYNTHETIC: YES; SYNTHETIC: YES	J.E.A.WIBLEY,L.H.PEARL
2003_07_15	1pbu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: ELONGATION FACTOR 1-GAMMA; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 276-437); SYNONYM: EF-1-GAMMA, EEF-1B GAMMA, PRO1608; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN; GENE: EEF1G OR EF1G;	S.VANWETSWINKEL,J.KRIEK,G.R.ANDERSEN,P.GUNTERT,J.DIJK, G.W.CANTERS,G.SIEGAL

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field