EVA: Detailed information for proteins added on: 2003_07_01

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_07_01	1h0z	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SERINE PROTEINASE INHIBITOR	MOLECULE: SERINE PROTEASE INHIBITOR KAZAL-TYPE 5, CONTAINS HEMOFILTRATE PEPTIDE HF6478, HEMOFILTRATE PEPTIDE HF7665; SYNONYM: HF7665, LYMPHO-EPITHELIAL KAZAL-TYPE RELATED INHIBITOR, LEKTI; CHAIN: A; FRAGMENT: LEKTI DOMAIN SIX (HF7665), RESIDUES 356-423; OTHER_DETAILS: DISULFIDE LINKAGE BETWEEN CYS A12 AND CYS A48, AND BETWEEN CYS A26 AND CYS A45	HOMO SAPIENS; HUMAN; ORGAN: BLOOD; CELL: LYMPHO EPITHELIAL CELLS	T.LAUBER,P.ROESCH,U.C.MARX
2003_07_01	1o7i	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA-BINDING PROTEIN	MOLECULE: SINGLE STRANDED DNA BINDING PROTEIN; SYNONYM: SSB, SSO2364; CHAIN: A, B; FRAGMENT: RESIDUES 1-119; ENGINEERED: YES	SULFOLOBUS SOLFATARICUS; STRAIN: P2;	I.D.KERR,J.H.NAISMITH
2003_07_01	1oed	E	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ION CHANNEL/RECEPTOR	MOLECULE: ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN; SYNONYM: NICOTINIC ACETYLCHOLINE RECEPTOR; CHAIN: A, D; FRAGMENT: MEMBRANE-SPANNING DOMAIN, RESIDUES 235-461; MOLECULE: ACETYLCHOLINE RECEPTOR PROTEIN, BETA CHAIN; SYNONYM: NICOTINIC ACETYLCHOLINE RECEPTOR; CHAIN: B; FRAGMENT: MEMBRANE-SPANNING DOMAIN, RESIDUES 241-490; MOLECULE: ACETYLCHOLINE RECEPTOR PROTEIN, DELTA CHAIN; SYNONYM: NICOTINIC ACETYLCHOLINE RECEPTOR; CHAIN: C; FRAGMENT: MEMBRANE-SPANNING DOMAIN, RESIDUES 246-505; MOLECULE: ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN; SYNONYM: NICOTINIC ACETYLCHOLINE RECEPTOR; CHAIN: E; FRAGMENT: MEMBRANE-SPANNING DOMAIN, RESIDUES 236-495	TORPEDO MARMORATA; MARBLED ELECTRIC RAY; ORGAN: ELECTRIC ORGAN; TISSUE: DERIVED FROM MUSCLE; TORPEDO MARMORATA; MARBLED ELECTRIC RAY; ORGAN: ELECTRIC ORGAN; TISSUE: DERIVED FROM MUSCLE; TORPEDO MARMORATA; MARBLED ELECTRIC RAY; ORGAN: ELECTRIC ORGAN; TISSUE: DERIVED FROM MUSCLE; TORPEDO MARMORATA; MARBLED ELECTRIC RAY; ORGAN: ELECTRIC ORGAN; TISSUE: DERIVED FROM MUSCLE	A.MIYAZAWA,Y.FUJIYOSHI,N.UNWIN
2003_07_01	1p4q	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/TRANSFERASE	MOLECULE: CBP/P300-INTERACTING TRANSACTIVATOR 2; CHAIN: A; FRAGMENT: TRANSACTIVATION DOMAIN; SYNONYM: MSG-RELATED PROTEIN 1, MRG1 PROTEIN, P35SRJ; ENGINEERED: YES; MOLECULE: E1A-ASSOCIATED PROTEIN P300; CHAIN: B; FRAGMENT: CYSTEINE/HISTIDINE-RICH 1 (CH1) DOMAIN; SYNONYM: P300; EC: 2.3.1.48; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: CITED2 OR MRG1; HOMO SAPIENS; HUMAN; GENE: EP300 OR P300;	S.J.FREEDMAN,Z-Y.J.SUN,A.L.KUNG,D.S.FRANCE,G.WAGNER,M.J.ECK
2003_07_01	1pqs	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: CELL DIVISION CONTROL PROTEIN 24; CHAIN: A; FRAGMENT: C-TERMINAL OPCA DOMAIN; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: CDC24P;	D.LEITNER,M.WAHL,D.LABUDDE,A.DIEHL,P.SCHMIEDER,J.R.PIRES, M.FOSSI,M.LEIDERT,G.KRAUSE,H.OSCHKINAT

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field