EVA: Detailed information for proteins added on: 2003_06_24

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_06_24	1iyc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIFUNGAL PROTEIN	MOLECULE: SCARABAECIN; CHAIN: A; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN THE COCONUT RHINOCEROS BEETLE.	H.HEMMI,J.ISHIBASHI,T.TOMIE,M.YAMAKAWA
2003_06_24	1jov	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	UNKNOWN FUNCTION	MOLECULE: HI1317; CHAIN: A; ENGINEERED: YES	HAEMOPHILUS INFLUENZAE; BACTERIA; GENE: HI1317;	N.BONANDER,M.TORDOVA,A.J.HOWARD,E.EISENSTEIN,G.GILLILAND
2003_06_24	1k0p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT; CHAIN: A; FRAGMENT: ZINC FINGER DOMAIN (RESIDUES 1347-1377); EC: 2.7.7.7; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OCCURS NATURALLY IN HOMO SAPIENS (HUMAN).	W.W.YANG,F.EVANICS,S.BASU,R.N.BOSE
2003_06_24	1lkn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL PROTEIN TM1112; CHAIN: A; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA; GENE: TM1112;	Y.XIA,A.YEE,A.SEMESI,C.H.ARROWSMITH
2003_06_24	1oc0	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SERINE PROTEASE INHIBITOR/COMPLEX	MOLECULE: PLASMINOGEN ACTIVATOR INHIBITOR-1; SYNONYM: ENDOTHELIAL PLASMINOGEN ACTIVATOR INHIBITOR, PAI-1,PAI; CHAIN: A; ENGINEERED: YES; MUTATION: YES; MOLECULE: VITRONECTIN; SYNONYM: SERUM SPREADING FACTOR,S-PROTEIN,S75; CHAIN: B; FRAGMENT: SOMATOMEDIN B,RESIDUES 20-70	HOMO SAPIENS; HUMAN; TISSUE: BLOOD; HOMO SAPIENS; HUMAN; OTHER_DETAILS: OBTAINED BY CNBR CLEAVAGE OF FUSION PROTEIN	R.J.READ,A.ZHOU,J.A.HUNTINGTON,N.S.PANNU,R.W.CARRELL
2003_06_24	1otr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: PROTEIN CUE2; CHAIN: A; FRAGMENT: AMINO-TERMINAL CUE DOMAIN, RESIDUES 6-54; SYNONYM: HYPOTHETICAL 50.9 KD PROTEIN IN BUD2-MIF2 INTERGENIC REGION; HYPOTHETICAL PROTEIN YKL090W; ENGINEERED: YES; MOLECULE: UBIQUITIN; CHAIN: B; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: CUE2; SACCHAROMYCES CEREVISIAE; YEAST; GENE: UBI1;	R.S.KANG,C.M.DANIELS,W.J.SALERNO,I.RADHAKRISHNAN
2003_06_24	1plz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; CHAIN: A; FRAGMENT: PHOSPHOGLUCOSE ISOMERASE; SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI; EC: 5.3.1.9; ENGINEERED: YES; MUTATION: YES	PYROCOCCUS FURIOSUS; GENE: PGIA OR PF0196;	J.M.BERRISFORD,J.AKERBOOM,A.P.TURNBULL,D.DE GUES, S.E.SEDELNIKOVA,I.STATON,C.W.MCLEOD,C.H.VERHEES,J.VAN DER OOST,D.W.RICE,P.J.BAKER

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field