EVA: Detailed information for proteins added on: 2003_06_17

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_06_17	1j2m	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: 17-KDA PKC-POTENTIATED INHIBITORY PROTEIN OF PP1; CHAIN: A; SYNONYM: CPI-17; ENGINEERED: YES	SUS SCROFA; PIG; STRAIN: DH5A; TISSUE: AORTA;	S.OHKI,M.ETO,R.TAKADA,M.SHIMIZU,D.L.BRAUTIGAN,M.KAINOSHO
2003_06_17	1ju8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HORMONE/GROWTH FACTOR	MOLECULE: LEGINSULIN; CHAIN: A; FRAGMENT: RESIDUES 1-37; SYNONYM: ALBUMIN 1; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN LEGUMES OF GLYCINE MAX.	T.YAMAZAKI,M.TAKAOKA,E.KATOH,K.HANADA,M.SAKITA,K.SAKATA, Y.NISHIUCHI,H.HIRANO
2003_06_17	1oi1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MBT	MOLECULE: SCML2 PROTEIN; CHAIN: A; FRAGMENT: RESIDUES 24-243 MBT DOMAIN; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN; OTHER_DETAILS: CDNA SUBCLONED	A.SATHYAMURTHY,M.D.ALLEN,A.G.MURZIN,M.BYCROFT
2003_06_17	1pb5	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; CHAIN: A; FRAGMENT: FIRST LNR MODULE; SYNONYM: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	D.VARDAR,C.L.NORTH,C.SANCHEZ-IRIZARRY,J.C.ASTER,S.C.BLACKLOW

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field