EVA: Detailed information for proteins added on: 2003_06_10

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_06_10	1lx8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: EXCISIONASE; CHAIN: A; FRAGMENT: DNA BINDING DOMAIN; SYNONYM: XIS; ENGINEERED: YES; MUTATION: YES	BACTERIOPHAGE LAMBDA; VIRUS; GENE: XIS;	M.D.SAM,C.PAPAGIANNIS,K.M.CONNOLLY,L.CORSELLI,J.IWAHARA, J.LEE,M.PHILLIPS,J.M.WOJCIAK,R.C.JOHNSON,R.T.CLUBB
2003_06_10	1mn3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN TRANSPORT	MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS9; CHAIN: A; FRAGMENT: CUE DOMAIN (RESIDUES 398-451); ENGINEERED: YES; MUTATION: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: VPS9;	G.PRAG,S.MISRA,E.JONES,R.GHIRLANDO,B.A.DAVIES, B.F.HORAZDOVSKY,J.H.HURLEY
2003_06_10	1n7z	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: BASEPLATE STRUCTURAL PROTEIN GP8; CHAIN: A, B, C, D; SYNONYM: BASEPLATE WEDGE PROTEIN 8; ENGINEERED: YES	BACTERIOPHAGE T4; VIRUS; GENE: GENE 8;	P.G.LEIMAN,M.M.SHNEIDER,V.A.KOSTYUCHENKO,P.R.CHIPMAN, V.V.MESYANZHINOV,M.G.ROSSMANN
2003_06_10	1nu3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: LIMONENE-1,2-EPOXIDE HYDROLASE; CHAIN: A, B; EC: 3.3.2.8; ENGINEERED: YES; MUTATION: YES	RHODOCOCCUS ERYTHROPOLIS; BACTERIA; GENE: LIMA;	M.ARAND,B.M.HALLBERG,J.ZOU,T.BERGFORS,F.OESCH,M.J.VAN DER WERF,J.A.M.DE BONT,T.A.JONES,S.L.MOWBRAY
2003_06_10	1ogh	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: BIFUNCTIONAL DEAMINASE/DIPHOSPHATASE; SYNONYM: MJDCD-DUT, DCD/DUT, (INCLUDES: DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE, (DCTP DEAMINASE), DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE, (DUTPASE, DUTP PYROPHOSPHATASE)); CHAIN: A, B; EC: 3.5.4.13, 3.6.1.23; ENGINEERED: YES	METHANOCALDOCOCCUS JANNASCHII; ATCC: 43067;	E.JOHANSSON,O.BJORNBERG,P.O.NYMAN,S.LARSEN
2003_06_10	1p42	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE; CHAIN: A, B; FRAGMENT: SEQUENCE DATABASE RESIDUE 2-271; SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE; EC: 3.5.1.-; ENGINEERED: YES; MUTATION: YES	AQUIFEX AEOLICUS; GENE: LPXC OR ENVA OR AQ_1772;	D.A.WHITTINGTON,K.M.RUSCHE,H.SHIN,C.A.FIERKE, D.W.CHRISTIANSON

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field