EVA: Detailed information for proteins added on: 2003_06_03

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_06_03	1lwr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL ADHESION	MOLECULE: NEURAL CELL ADHESION MOLECULE 1, 140 KDA ISOFORM; CHAIN: A; SYNONYM: NCAM; NCAM POLYPEPTIDE; N-CAM 140; NCAM-140; ENGINEERED: YES	RATTUS NORVEGICUS; RAT; GENE: NCAM1;	V.V.KISELYOV,G.SKLADCHIKOVA,A.HINSBY,P.H.JENSEN,N.KULAHIN, N.PEDERSEN,V.TSETLIN,F.M.POULSEN,V.BEREZIN,E.BOCK
2003_06_03	1m9o	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: TRISTETRAPROLINE; CHAIN: A; FRAGMENT: ZINC BINDING DOMAIN (RESIDUES 91-163); SYNONYM: TTP, TIS11A PROTEIN, TIS11, ZFP-36, GROWTH FACTOR- INDUCIBLE NUCLEAR PROTEIN NUP475, TPA INDUCED SEQUENCE 11; ENGINEERED: YES; MUTATION: YES	MUS MUSCULUS; MOUSE; GENE: NUP475;	B.T.AMANN,M.T.WORTHINGTON,J.M.BERG
2003_06_03	1o9v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LECTIN	MOLECULE: F17-AG LECTIN DOMAIN; CHAIN: A; FRAGMENT: CARBOHYDRATE-BINDING DOMAIN, RESIDUES 23-199; ENGINEERED: YES	ESCHERICHIA COLI;	L.BUTS,E.DE GENST,R.LORIS,S.OSCARSON,M.LAHMANN,J.MESSENS, E.BROSENS,L.WYNS,J.BOUCKAERT,H.DE GREVE

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field