EVA: Detailed information for proteins added on: 2003_05_13

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_05_13	1h5o	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	NEUROTOXIN	MOLECULE: MYOTOXIN; SYNONYM: CROTAMINE; CHAIN: A	CROTALUS DURISSUS TERRIFICUS; SOUTH AMERICAN RATTLESNAKE; OTHER_DETAILS: VENOM OF THE RATTLESNAKE CROTALUS DURISSUS TERRIFICUS	G.NICASTRO,L.FRANZONI,C.DE CHIARA,C.A.MANCIN,J.R.GIGLIO, A.SPISNI
2003_05_13	1hl6	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNAL PROTEIN	MOLECULE: CG8781 PROTEIN; CHAIN: A, C; ENGINEERED: YES; MOLECULE: MAGO NASHI PROTEIN; SYNONYM: MAGO; CHAIN: B, D; ENGINEERED: YES	DROSOPHILA MELANOGASTER; FRUIT FLY; DROSOPHILA MELANOGASTER; FRUIT FLY;	S.FRIBOURG,D.GATFIELD,W.YAO,E.IZAURRALDE,E.CONTI
2003_05_13	1j2o	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: FUSION OF RHOMBOTIN-2 AND LIM DOMAIN-BINDING PROTEIN 1; CHAIN: A; SYNONYM: FLIN2; ENGINEERED: YES; OTHER_DETAILS: PROTEIN IS A FUSION OF THE N-TERMINAL LIM DOMAIN OF LMO2 (RESIDUES 26-87) FOLLOWED BY AN ELEVEN RESIDUE LINKER (GGSGGHMGSGG) THAN THE LID DOMAIN FROM LDB1 (RESIDUES 300-339). ORIGINALLY EXPRESSED AS A FUSION WITH GST. GST PORTION REMOVED BY TREATMENT WITH THROMBIN.	MUS MUSCULUS; MOUSE; GENE: LMO2, LDB1;	J.E.DEANE,J.P.MACKAY,A.H.-Y.KWAN,E.Y.SUM,J.E.VISVADER, J.M.MATTHEWS
2003_05_13	1mm0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: TERMICIN; CHAIN: A; ENGINEERED: YES	PSEUDACANTHOTERMES SPINIGER; FUNGI;	P.DA SILVA,L.JOUVENSAL,M.LAMBERTY,P.BULET,A.CAILLE,F.VOVELLE
2003_05_13	1n1c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: TORA SPECIFIC CHAPERONE; CHAIN: A, B; ENGINEERED: YES; MUTATION: YES	SHEWANELLA MASSILIA; BACTERIA; GENE: TORD;	S.TRANIER,C.IOBBI-NIVOL,I.MORTIER-BARRIERE,C.BIRCK,V.MEJEAN, J.-P.SAMAMA
2003_05_13	1nj7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ATTRACTIN	MOLECULE: ATTRACTIN; CHAIN: A; ENGINEERED: YES	APLYSIA CALIFORNICA; CALIFORNIA SEA HARE;	G.RAVINDRANATH,Y.XU,C.H.SCHEIN,K.RAJARATNAM,S.D.PAINTER, G.T.NAGLE,W.BRAUN
2003_05_13	1oqd	K	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE RESPONSE	MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B, SOLUBLE FORM; CHAIN: A, B, C, D, E, F, G, H, I, J; FRAGMENT: EXTRACELLULAR DOMAIN; SYNONYM: TNF-AND APOL- RELATED LEUKOCYTE EXPRESSED LIGAND 1, TALL-1, B LYMPHOCYTE STIMULATOR, BLYS, B CELL- ACTIVATING FACTOR, BAFF, DENDRITIC CELL- DERIVED TNF-LIKE MOLECULE; ENGINEERED: YES; MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 17; CHAIN: K, L, M, N, O, P, Q, R; FRAGMENT: EXTRACELLULAR DOMAIN; SYNONYM: B-CELL MATURATION PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	G.ZHANG
2003_05_13	1owt	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	APOPTOSIS	MOLECULE: AMYLOID BETA A4 PROTEIN; CHAIN: A; FRAGMENT: COPPER BINDING DOMAIN; SYNONYM: AMYLOID PRECURSOR PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: APP;	K.J.BARNHAM,W.J.MCKINSTRY,G.MULTHAUP,D.GALATIS,C.J.MORTON, C.C.CURTAIN,N.A.WILLIAMSON,A.R.WHITE,M.G.HINDS,R.S.NORTON, K.BEYREUTHER,C.L.MASTERS,M.W.PARKER,R.CAPPAI

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field