EVA: Detailed information for proteins added on: 2003_05_06

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_05_06	1n6z	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL 12.3 KDA PROTEIN IN ZDS2-URA5 INTERGENIC REGION; CHAIN: A; FRAGMENT: YML108W; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: YML108W OR YM8339.11;	A.PINEDA-LUCENA,C.H.ARROWSMITH
2003_05_06	1no1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION	MOLECULE: REPLISOME ORGANIZER; CHAIN: A, B, C; FRAGMENT: G39P112 TRUNCATED VARIANT; SYNONYM: G39P; GENE 39; ENGINEERED: YES; OTHER_DETAILS: NATIVELY UNFOLDED N-TERMINAL DOMAIN	BACTERIOPHAGE SPP1; BACTERIOPHAGE; GENE: 39;	S.BAILEY,S.E.SEDELNIKOVA,P.MESA,S.AYORA,J.P.WALTHO, A.E.ASHCROFT,A.J.BARON,J.C.ALONSO,J.B.RAFFERTY
2003_05_06	1o0p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: SPLICING FACTOR U2AF 65 KDA SUBUNIT; CHAIN: A; FRAGMENT: C-TERMINAL RRM DOMAIN; SYNONYM: U2 AUXILIARY FACTOR 65 KDA SUBUNIT, U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT, HU2AF(65); ENGINEERED: YES; MOLECULE: SPLICING FACTOR SF1; CHAIN: B; FRAGMENT: N-TERMINAL PEPTIDE; ENGINEERED: YES	HOMO SAPIENS; HUMAN; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED AND DERIVED FROM THE N-TERMINUS OF SF1. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).	P.SELENKO,G.GREGOROVIC,R.SPRANGERS,G.STIER,Z.RHANI,A.KRAMER, M.SATTLER
2003_05_06	1ors	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: 33H1 FAB LIGHT CHAIN; CHAIN: A; MOLECULE: 33H1 FAB HEAVY CHAIN; CHAIN: B; MOLECULE: POTASSIUM CHANNEL; CHAIN: C; ENGINEERED: YES	MUS MUSCULUS; MOUSE; OTHER_DETAILS: MOUSE HYBRIDOMA; MUS MUSCULUS; MOUSE; OTHER_DETAILS: MOUSE HYBRIDOMA; AEROPYRUM PERNIX; ARCHAEA;	Y.JIANG,A.LEE,J.CHEN,V.RUTA,M.CADENE,B.T.CHAIT,R.MACKINNON

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field