EVA: Detailed information for proteins added on: 2003_04_15

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2003_04_15	1mog	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	UNKNOWN FUNCTION	MOLECULE: DODECIN; CHAIN: A; FRAGMENT: RESIDUES 10-77; SYNONYM: VNG1446H	HALOBACTERIUM SALINARUM; ARCHAEABACTERIA	B.BIEGER,L.-O.ESSEN,D.OESTERHELT
2003_04_15	1mtp	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS	MOLECULE: SERINE PROTEINASE INHIBITOR (SERPIN), CHAIN A; CHAIN: A; FRAGMENT: CHAIN A, RESIDUE 55-377; ENGINEERED: YES; MOLECULE: SERINE PROTEINASE INHIBITOR (SERPIN), CHAIN B; CHAIN: B; FRAGMENT: CHAIN B, RESIDUE 378-420; ENGINEERED: YES	THERMOBIFIDA FUSCA; BACTERIA; THERMOBIFIDA FUSCA; BACTERIA;	J.A.IRVING,L.D.CABRITA,J.ROSSJOHN,R.N.PIKE,S.P.BOTTOMLEY, J.C.WHISSTOCK
2003_04_15	1n87	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE/CELL CYCLE	MOLECULE: PRE-MRNA SPLICING FACTOR PRP19; CHAIN: A; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: PRP19;	M.D.OHI,C.W.VANDER KOOI,W.J.CHAZIN
2003_04_15	1nqd	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: CLASS 1 COLLAGENASE; CHAIN: A, B; FRAGMENT: COLLAGEN-BINDING DOMAIN; EC: 3.4.24.3; ENGINEERED: YES	CLOSTRIDIUM HISTOLYTICUM; BACTERIA; GENE: COLG;	J.J.WILSON,O.MATSUSHITA,A.OKABE,J.SAKON
2003_04_15	1o0c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE/RNA	MOLECULE: GLUTAMINYL-TRNA SYNTHETASE; CHAIN: A; SYNONYM: GLUTAMINE--TRNA LIGASE; GLUTAMINE TRNA SYNTHETASE; GLNRS; EC: 6.1.1.18; ENGINEERED: YES; OTHER_DETAILS: COMPLEXED WITH AMPCPP, SEE REMARK 600; MOLECULE: GLUTAMINYL TRNA; CHAIN: B; SYNONYM: TRNA(GLN); TRANSFER RNA-GLN II; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA; GENE: GLNS; SYNTHETIC: YES; OTHER_DETAILS: PRODUCT OF RUNOFF T7 POLYMERASE TRANSCRIPTION FROM A DOUBLE HELICAL DNA TEMPLATE	T.L.BULLOCK,J.J.PERONA
2003_04_15	1or7	A-C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: RNA POLYMERASE SIGMA-E FACTOR; CHAIN: A, B; SYNONYM: SIGMA-24; ENGINEERED: YES; MOLECULE: SIGMA-E FACTOR NEGATIVE REGULATORY PROTEIN; CHAIN: C, F; FRAGMENT: RSEA-N, RESIDUES 1-90; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; GENE: RPOE OR SIGE OR B2573 OR C3097 OR Z3855 OR ECS3439 OR SF2635; ESCHERICHIA COLI; BACTERIA; GENE: RSEA OR MCLA OR B2572 OR C3096;	E.A.CAMPBELL,J.L.TUPY,T.M.GRUBER,S.WANG,M.M.SHARP,C.A.GROSS, S.A.DARST

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field