EVA: Detailed information for proteins added on: 2002_11_06

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_11_06	1ixs	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: HOLLIDAY JUNCTION DNA HELICASE RUVA; CHAIN: A; FRAGMENT: RUVA DOMAIN III; ENGINEERED: YES; MOLECULE: RUVB; CHAIN: B; FRAGMENT: RESIDUES 1-318; EC: 3.6.1.3; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA; GENE: RUVA; THERMUS THERMOPHILUS; BACTERIA; GENE: RUVB;	K.YAMADA,T.MIYATA,D.TSUCHIYA,T.OYAMA,Y.FUJIWARA,T.OHNISHI, H.IWASAKI,H.SHINAGAWA,M.ARIYOSHI,K.MAYANAGI,K.MORIKAWA
2002_11_06	1l9l	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: GRANULYSIN; CHAIN: A; SYNONYM: T-CELL ACTIVATION PROTEIN 519, NKG5 PROTEIN, LYMPHOKINE LAG-2; ENGINEERED: YES	HOMO SAPIENS; HUMAN; CELL: LYMPHOCYTE;	D.H.ANDERSON,M.R.SAWAYA,D.CASCIO,W.ERNST,A.KRENSKY,R.MODLIN, D.EISENBERG
2002_11_06	1lns	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: X-PROLYL DIPEPTIDYL AMINOPETIDASE; CHAIN: A; SYNONYM: X-PRO DIPEPTIDYL-PEPTIDASE, XAA-PRO DIPEPTIDYL- PEPTIDASE; EC: 3.4.14.11; ENGINEERED: YES	LACTOCOCCUS LACTIS; BACTERIA; GENE: PEPX (ORF2);	P.RIGOLET,I.MECHIN,M.M.DELAGE,J.F.CHICH
2002_11_06	1m42	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: COPPER RESISTANCE PROTEIN C; CHAIN: A; ENGINEERED: YES	PSEUDOMONAS SYRINGAE; BACTERIA; GENE: COPC;	F.ARNESANO,L.BANCI,I.BERTINI,A.R.THOMPSETT
2002_11_06	1m5z	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: AMPA RECEPTOR INTERACTING PROTEIN; CHAIN: A; FRAGMENT: THE SEVENTH PDZ DOMAIN OF GLUTAMATE RECEPTOR INTERACTING PROTEIN; SYNONYM: GRIP; ENGINEERED: YES	RATTUS NORVEGICUS; RAT;	W.FENG,J.FAN,M.JIANG,Y.SHI,M.ZHANG
2002_11_06	1mn4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: NDT80 PROTEIN; CHAIN: A; FRAGMENT: DNA-BINDING CORE (RESIDUES 59-340); ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: NDT80;	J.S.LAMOUREUX,D.STUART,R.TSANG,C.WU,J.N.M.GLOVER
2002_11_06	1mt6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: SET9; CHAIN: A; SYNONYM: HISTONE H3 LYSINE 4 SPECIFIC METHYLTRANSFERASE, SET7/9; EC: 2.1.1.43; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	S.A.JACOBS,J.M.HARP,S.DEVARAKONDA,Y.KIM,F.RASTINEJAD, S.KHORASANIZADEH
2002_11_06	1o75	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIPOPROTEIN/ANTIGEN	MOLECULE: 47 KDA MEMBRANE ANTIGEN; CHAIN: A, B; ENGINEERED: YES; MUTATION: YES	TREPONEMA PALLIDUM;	R.K.DEKA,M.MACHIUS,M.V.NORGARD,D.R.TOMCHICK

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field