EVA: Detailed information for proteins added on: 2002_09_18

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_09_18	1gxu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PHOSPHATASE	MOLECULE: HYDROGENASE MATURATION PROTEIN HYPF; CHAIN: A; FRAGMENT: ACYLPHOSPHATASE-LIKE DOMAIN, RESIDUES 1-91; ENGINEERED: YES	SYNTHETIC: YES; ESCHERICHIA COLI;	C.ROSANO,S.ZUCCOTTI,M.STEFANI,M.BUCCIANTINI,G.RAMPONI, M.BOLOGNESI
2002_09_18	1gzs	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	COMPLEX (TOXIN/CELL CYCLE PROTEIN)	MOLECULE: SOPE; CHAIN: B, D; FRAGMENT: GUANINE NUCTLEOTIDE EXCHANGE FACTOR (GEF-DOMAIN), RESIDUES 78-240; ENGINEERED: YES; MOLECULE: GTP-BINDING PROTEIN; SYNONYM: PLACENTAL ISOFORM, CDC42 G25K; CHAIN: A, C; FRAGMENT: RESIDUES 1-178	SALMONELLA TYPHIMURIUM; HOMO SAPIENS;	G.BUCHWALD,A.FRIEBEL,J.E.GALAN,W.D.HARDT,A.WITTINGHOFER, K.SCHEFFZEK
2002_09_18	1kwg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: BETA-GALACTOSIDASE; CHAIN: A; EC: 3.2.1.23; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA; STRAIN: A4;	M.HIDAKA,S.FUSHINOBU,N.OHTSU,H.MOTOSHIMA,H.MATSUZAWA, H.SHOUN,T.WAKAGI
2002_09_18	1l2m	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: REP PROTEIN; CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 4-121), DNA-BINDING DOMAIN; ENGINEERED: YES	TOMATO YELLOW LEAF CURL VIRUS - SARDINIA; VIRUS; GENE: REP;	R.CAMPOS-OLIVAS,J.M.LOUIS,D.CLEROT,B.GRONENBORN, A.M.GRONENBORN
2002_09_18	1lv9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CYTOKINE	MOLECULE: SMALL INDUCIBLE CYTOKINE B10; CHAIN: A; SYNONYM: CXCL10, INTERFERON-GAMMA INDUCED PROTEIN, GAMMA- IP10, IP-10; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THE SEQUENCE OF THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS. IT WAS SYNTHESIZED BY STEPWISE SOLID PHASE METHODS USING T-BUTOXYCARBONYL PROTECTION CHEMISTRY.	V.BOOTH,D.W.KEIZER,M.B.KAMPHUIS,I.CLARK-LEWIS,B.D.SYKES
2002_09_18	1mgp	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIPID BINDING PROTEIN	MOLECULE: HYPOTHETICAL PROTEIN TM841; CHAIN: A; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA;	U.SCHULZE-GAHMEN,J.PELASCHIER,H.YOKOTA,R.KIM,S.-H.KIM
2002_09_18	1mm5	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: CRCA PROTEIN; CHAIN: A; SYNONYM: PAGP ENZYME; ENGINEERED: YES; MUTATION: YES	ESCHERICHIA COLI; BACTERIA; GENE: CRCA;	P.M.HWANG,W.-Y.CHOY,E.I.LO,L.CHEN,J.D.FORMAN-KAY, C.R.H.RAETZ,G.G.PRIVE,R.E.BISHOP,L.E.KAY

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field