EVA: Detailed information for proteins added on: 2002_09_04

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_09_04	1ko6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP98; CHAIN: A, C; FRAGMENT: C-TERMINAL AUTOPROTEOLYTIC DOMAIN (SEQUENCE DATABASE RESIDUES 677-863); SYNONYM: NUCLEOPORIN NUP98, 98KDA NUCLEOPORIN; ENGINEERED: YES; MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP98; CHAIN: B, D; FRAGMENT: C-TERMINAL AUTOPROTEOLYTIC DOMAIN (SEQUENCE DATABASE RESIDUES 864-920); SYNONYM: NUCLEOPORIN NUP98, 98KDA NUCLEOPORIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	A.E.HODEL,M.R.HODEL,E.R.GRIFFIS,K.A.HENNIG,G.A.RATNER, X.SONGLI,M.A.POWERS
2002_09_04	1koy	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	APOPTOSIS	MOLECULE: DNA FRAGMENTATION FACTOR ALPHA SUBUNIT; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN; SYNONYM: DFF-45, DFF-C; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	K.FUKUSHIMA,J.KIKUCHI,S.KOSHIBA,T.KIGAWA,Y.KURODA,S.YOKOYAMA
2002_09_04	1lrz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIBIOTIC INHIBITOR	MOLECULE: FACTOR ESSENTIAL FOR EXPRESSION OF METHICILLIN RESISTANCE; CHAIN: A; SYNONYM: FEMA; ENGINEERED: YES	STAPHYLOCOCCUS AUREUS; BACTERIA; GENE: FEMA;	T.BENSON,D.PRINCE,V.MUTCHLER,K.CURRY,A.HO,R.SARVER, J.HAGADORN,G.CHOI,R.GARLICK

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field