EVA: Detailed information for proteins added on: 2002_08_28

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_08_28	1iw4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: TRYPSIN INHIBITOR; CHAIN: A	HALOCYNTHIA RORETZI; SEA SQUIRT	H.HEMMI,T.YOSHIDA,T.KUMAZAKI,N.NEMOTO,J.HASEGAWA,F.NISHIOKA, Y.KYOGOKU,H.YOKOSAWA,Y.KOBAYASHI
2002_08_28	1jv1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: GLCNAC1P URIDYLTRANSFERASE ISOFORM 1: AGX1; CHAIN: A, B; SYNONYM: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; EC: 2.7.7.-; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: UAP1;	C.PENEFF,Y.BOURNE
2002_08_28	1koz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: VOLTAGE-DEPENDENT CHANNEL INHIBITOR; CHAIN: A; SYNONYM: OMEGA-GRAMMOTOXIN SIA; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: CHEMICALLY SYNTHESIZED BY A SOLID-PHASE METHODOLOGY	K.TAKEUCHI,E.J.PARK,C.W.LEE,J.I.KIM,H.TAKAHASHI,K.J.SWARTZ, I.SHIMADA
2002_08_28	1l8d	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION	MOLECULE: DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE; CHAIN: A, B; FRAGMENT: RAD50 COILED-COIL FRAGMENT CONTAINING THE CXXC MOTIF, RAD50 MOLECULAR HOOK; ENGINEERED: YES	PYROCOCCUS FURIOSUS;	K.P.HOPFNER,J.TAINER
2002_08_28	1lmz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: 3-METHYLADENINE DNA GLYCOSYLASE I (TAG); CHAIN: A; EC: 3.2.2.20; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; STRAIN: B; GENE: TAG;	A.C.DROHAT,K.KWON,D.J.KROSKY,J.T.STIVERS
2002_08_28	1luz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: PROTEIN K3; CHAIN: A, B; SYNONYM: PROTEIN K2; ENGINEERED: YES	VACCINIA VIRUS; VIRUS; STRAIN: WR; GENE: K3L;	A.C.DAR,F.SICHERI
2002_08_28	1m4i	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE; CHAIN: A, B; SYNONYM: AMINOSUGAR N-ACETYLTRANSFERASE, AAC(2')-IC; EC: 2.3.1.-		M.W.VETTING,S.S.HEGDE,F.JAVID-MAJD,J.S.BLANCHARD, S.L.RODERICK

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field