EVA: Detailed information for proteins added on: 2002_07_31

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_07_31	1j5u	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: CONSERVED HYPOTHETICAL PROTEIN TM1083; CHAIN: A; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA; GENE: TM1083;	JOINT CENTER FOR STRUCTURAL GENOMICS
2002_07_31	1j5y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY; CHAIN: A; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA; GENE: TM1602;	JOINT CENTER FOR STRUCTURAL GENOMICS
2002_07_31	1lm5	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: SUBDOMAIN OF DESMOPLAKIN CARBOXY-TERMINAL DOMAIN (DPCT); CHAIN: A, B; FRAGMENT: RESIDUES 2609-2822; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	H.J.CHOI,S.PARK-SNYDER,L.T.PASCOE,K.J.GREEN,W.I.WEIS
2002_07_31	1lsh	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIPID BINDING PROTEIN	MOLECULE: LIPOVITELLIN (LV-1N, LV-1C); CHAIN: A; FRAGMENT: LV1N, LV1C; MOLECULE: LIPOVITELLIN (LV-2); CHAIN: B; FRAGMENT: LV2	ICHTHYOMYZON UNICUSPIS; SILVER LAMPREY; OTHER_DETAILS: EGG YOLK; ICHTHYOMYZON UNICUSPIS; SILVER LAMPREY; OTHER_DETAILS: EGG YOLK	J.R.THOMPSON,L.J.BANASZAK

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field