EVA: Detailed information for proteins added on: 2002_07_17

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_07_17	1ifr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE SYSTEM	MOLECULE: LAMIN A/C; CHAIN: A; FRAGMENT: RESIDUES 436-552; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	S.DHE-PAGANON,E.D.WERNER,S.E.SHOELSON
2002_07_17	1j5s	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: URONATE ISOMERASE; CHAIN: A, B, C; SYNONYM: GLUCURONATE ISOMERASE, URONIC ISOMERASE; EC: 5.3.1.12; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA; GENE: TM0064;	JOINT CENTER FOR STRUCTURAL GENOMICS
2002_07_17	1j5w	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: GLYCYL-TRNA SYNTHETASE ALPHA CHAIN; CHAIN: A, B; SYNONYM: GLYCINE--TRNA LIGASE ALPHA CHAIN, GLYRS; EC: 6.1.1.14; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA; GENE: TM0216;	JOINT CENTER FOR STRUCTURAL GENOMICS
2002_07_17	1jmm	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE SYSTEM, MEMBRANE PROTEIN	MOLECULE: PROTEIN I/II V-REGION; CHAIN: A; FRAGMENT: V-REGION; SYNONYM: ANTIGEN I/II; PAC PROTEIN; SURFACE ANTIGEN PAC; ENGINEERED: YES	STREPTOCOCCUS MUTANS; BACTERIA;	N.TROFFER-CHARLIER,J.OGIER,D.MORAS,J.CAVARELLI
2002_07_17	1k0h	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: GPFII; CHAIN: A; SYNONYM: TAIL ATTACHMENT PROTEIN; ENGINEERED: YES	BACTERIOPHAGE LAMBDA; VIRUSES; GENE: FII;	K.L.MAXWELL,A.A.YEE,C.H.ARROWSMITH,M.GOLD,A.R.DAVIDSON
2002_07_17	1kam	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE; CHAIN: A, B, C, D; SYNONYM: DEAMIDO-NAD(+) PYROPHOSPHORYLASE; DEAMIDO-NAD(+) DIPHOSPHORYLASE; NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE; NAMN ADENYLYLTRANSFERASE; YQEJ; EC: 2.7.7.18; ENGINEERED: YES	BACILLUS SUBTILIS; BACTERIA; GENE: NADD;	A.M.OLLAND,K.W.UNDERWOOD,R.M.CZERWINSKI,M.C.LO,A.AULABAUGH, J.BARD,M.L.STAHL,W.S.SOMERS,F.X.SULLIVAN,R.CHOPRA
2002_07_17	1kkx	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: TRANSCRIPTION REGULATORY PROTEIN ADR6; CHAIN: A; FRAGMENT: ARID DOMAIN; SYNONYM: TRANSCRIPTION REGULATORY PROTEIN SWI1; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: ADR6;	X.TU,J.WU,Y.XU,Y.SHI
2002_07_17	1kn6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PROHORMONE CONVERTASE 1; CHAIN: A; FRAGMENT: N-TERMINAL PRO-DOMAIN; SYNONYM: NEUROENDOCRINE CONVERTASE 1; EC: 3.4.21.93; ENGINEERED: YES	MUS MUSCULUS; MOUSE;	M.A.TANGREA,P.N.BRYAN,N.SARI,J.ORBAN
2002_07_17	1lvf	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSPORT PROTEIN	MOLECULE: SYNTAXIN 6; CHAIN: A, B; FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-110); ENGINEERED: YES	RATTUS NORVEGICUS; RAT;	K.M.S.MISURA,J.B.BOCK,L.C.GONZALEZ,R.H.SCHELLER,W.I.WEIS
2002_07_17	1ly1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: POLYNUCLEOTIDE KINASE; CHAIN: A; FRAGMENT: KINASE DOMAIN, RESIDUES 1-181; SYNONYM: PNK, POLYNUCLEOTIDE 5'-HYDROXYL-KINASE; EC: 2.7.1.78; ENGINEERED: YES	BACTERIOPHAGE T4; VIRUS; GENE: PSET;	L.K.WANG,C.D.LIMA,S.SHUMAN
2002_07_17	1m4v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE SYSTEM	MOLECULE: SET3, SUPERANTIGEN-LIKE PROTEIN; CHAIN: A, B; SYNONYM: EXOTOXIN-LIKE PROTEIN; ENGINEERED: YES	STAPHYLOCOCCUS AUREUS; BACTERIA; GENE: SET3;	V.L.ARCUS,R.LANGLEY,T.PROFT,J.D.FRASER,E.N.BAKER

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field