EVA: Detailed information for proteins added on: 2002_07_10

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_07_10	1ipa	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: RNA 2'-O-RIBOSE METHYLTRANSFERASE; CHAIN: A; SYNONYM: RRMH; EC: 2.1.1.-; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA;	O.NUREKI,M.SHIROUZU,K.HASHIMOTO,R.ISHITANI,T.TERADA, M.TAMAKOSHI,T.OSHIMA,M.CHIJIMATSU,K.TAKIO,D.G.VASSYLYEV, T.SHIBATA,Y.INOUE,S.KURAMITSU,S.YOKOYAMA
2002_07_10	1iu1	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ENDOCYTOSIS/EXOCYTOSIS	MOLECULE: GAMMA1-ADAPTIN; CHAIN: A, B; FRAGMENT: EAR DOMAIN; SYNONYM: ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUBUNIT; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	T.NOGI,Y.SHIBA,M.KAWASAKI,T.SHIBA,N.MATSUGAKI,N.IGARASHI, M.SUZUKI,R.KATO,H.TAKATSU,K.NAKAYAMA,S.WAKATSUKI
2002_07_10	1j5p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL PROTEIN TM1643; CHAIN: A; ENGINEERED: YES	THERMOTOGA MARITIMA; BACTERIA; GENE: TM1643;	JOINT CENTER FOR STRUCTURAL GENOMICS
2002_07_10	1kq1	H	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: HOST FACTOR FOR Q BETA; CHAIN: A, B, H, I, K, M, S, T, Y, N, R, W; SYNONYM: HFQ; ENGINEERED: YES	STAPHYLOCOCCUS AUREUS; BACTERIA;	M.A.SCHUMACHER,R.F.PEARSON,T.MOLLER,P.VALENTIN-HANSEN, R.G.BRENNAN
2002_07_10	1lj2	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN/TRANSLATION	MOLECULE: NONSTRUCTURAL RNA-BINDING PROTEIN 34; CHAIN: A, B; FRAGMENT: C-TERMINAL DOMAIN; SYNONYM: NSP3-C; NS34; NCVP4; NON-STRUCTURAL PROTEIN NCVP4; ENGINEERED: YES; MUTATION: YES; MOLECULE: EUKARYOTIC PROTEIN SYNTHESIS INITIATION FACTOR; CHAIN: C, D; FRAGMENT: RESIDUES 132-159 OF AAC82471; SYNONYM: EIF4GI; ENGINEERED: YES	SIMIAN ROTAVIRUS SA11; VIRUS; SYNTHETIC: YES; OTHER_DETAILS: SEQUENCE APPEAR NATURALLY IN HOMO SAPIENS	C.M.GROFT,S.K.BURLEY
2002_07_10	1lqr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: GSMTX4; CHAIN: A	GRAMMOSTOLA SPATULATA; CHILEAN ROSE TARANTULA; OTHER_DETAILS: VENOM	R.E.OSWALD,T.M.SUCHYNA,R.MCFEETERS,P.GOTTLIEB,F.SACHS

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field