EVA results for 1ljb:A

DATE : 2002_05_15
TYPE : sec
NRES : 127
HEADER : TRANSPORT PROTEIN
COMPND : 2 MOLECULE: TRANSTHYRETIN;
SOURCE : 2 ORGANISM_SCIENTIFIC: RANA CATESBEIANA;
AUTHOR : K.M.BESETTI, G.KARLAPUDI

Results

method	prediction	diff_Q3	diff_sov	diff_info
	....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,..
seq	GTHGEADSKCPLMVKVLDAVRGIPAAKLPVKVFKQNEDKSWDLISSGTTSSDGEIHNLATEEQFVEGIYKLEFATKRFWSKLGLTPFHEYVDVVFTANDAGHRHYTTAVLLTPYSFSTTAVVSDVKE
dssp	-----------EEEEEEE----EE----EEEEEEE-----EEEEEEEE-----EE-----------EEEEEEE-HHHHHHHH--------EEEEEEE-----EEEEEEEEE----EEEEEEEEE---
apssp	-----------EEEEEEE----------EEEEEEE-------------------EEEE---------EEEEEEE---HHHH--------EEEEEEEE------EEEEEEEE------EEEEE-----	+2.8	+7.3	-0.01
apssp2	-----------EEEEEEE----------EEEEEEE-----EEEEE-E-------E------HH----EEEEEEE-HHHHHH--------EEEEEEEE------EEEEEEEE-----EEEEEE-----	+3.8	+4.0	+0.01
jpred	-----------EEEEEEE---------EEEEEEEE------EEEE----------------------EEEEEEE---------------EEEEEEEE------EEEEEEEE-----EEEEEE-----	+7.0	+8.8	+0.08
phd	-----------EEEEEEE--------EEEEEEEE------HHHH----------EEE-------EEEEEEEEE--HHHHHH------EEEEEEEEEE-----EEEEEEEEE----EEEEEEEE----	+10.4	+18.9	+0.14
phdpsi	------------EEEEEE---------EEEEEEEE-----EEEEEEEEE------------------EEEEEEE-HHHHHH-----E-EEEEEEEEEE-----EEEEEEEEE----EEEEEEE----	+10.7	+13.2	+0.16
prof_king	-----------EEEEEEE--------EEEEEEEEE-----EEEEEEEEE------------------EEEEEEE--HHHHH-------EEEEEEEEE------EEEEEEEE-----EEEEEEE----	+11.9	+18.4	+0.18
profsec	-----------EEEEEEE---------EEEEEEEE-----EEEEEEEEE----EEEEE---------EEEEEEEEHHHHHH--------EEEEEEEEE-----EEEEEEEE-----EEEEEEE----	+10.8	+21.4	+0.16
psipred	------------EEEEEE----------EEEEEEE-----EEEEEEEE------------HHH----EEEEEEE-HHHHHH--------EEEEEEEE-------EEEEEEE----EEEEEEE-----	+8.6	+9.2	+0.13
sspro2	------------EEEEEE---------EEEEEEEE-------E-----------------HHH----EEEEEEE-HHHHHH---------EEEEEEE-------EEEEEEE------EEEEE-----	+2.5	+3.5	+0.04

Notations used

DATE : date when added [yyyy_mm_dd]
TYPE : prediction category
COMPND : from PDB:DSSP: compound
SOURCE : from PDB:DSSP: organism asf
AUTHOR : from PDB:DSSP: authors of PDB structure
method : name of prediction method
prediction: actual prediction
diff_Q3 : Q3(this protein) - Q3(average over all proteins)
with: three-state per-residue accuracy (percentage of correctly predicted residues)
diff_sov : Sov3(this protein) - Sov3(average over all proteins)
with: three-state per-segment accuracy (percentage of segment overlap)
diff_info : info(this protein) - info(average over all proteins)
with: info=(infoO + infoP)/2information index accuracy (percentage of observed)
and with: infoO=information index accuracy (percentage of observed)
and with: infoP=information index accuracy (percentage of predicted)

Last update: May 15, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva