EVA: Detailed information for proteins added on: 2002_05_08

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_05_08	1iko	P	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: EPHRIN-B2; CHAIN: P; FRAGMENT: ECTODOMAIN, RESIDUES 30-207; SYNONYM: EPH-RELATED RECEPTOR TYROSINE KINASE LIGAND 5, LERK-5, HTK LIGAND, HTK-L, ELF-2; ENGINEERED: YES	MUS MUSCULUS; MOUSE; GENE: EPHRIN-B2;	J.TOTH,T.CUTFORTH,A.D.GELINAS,K.A.BETHONEY,J.BARD, C.J.HARRISON
2002_05_08	1jsx	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	UNKNOWN FUNCTION	MOLECULE: GLUCOSE-INHIBITED DIVISION PROTEIN B; CHAIN: A; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; GENE: GIDB;	M.J.ROMANOWSKI,J.B.BONANNO,S.K.BURLEY
2002_05_08	1kjy	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-1 SUBUNIT; CHAIN: A, C; SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN; ENGINEERED: YES; MOLECULE: REGULATOR OF G-PROTEIN SIGNALING 14; CHAIN: B, D; SYNONYM: RGS14; ENGINEERED: YES	HOMO SAPIENS; HUMAN; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN RATTUS NORVEGICUS (RAT).	R.J.KIMPLE,M.E.KIMPLE,L.BETTS,J.SONDEK,D.P.SIDEROVSKI
2002_05_08	1ksh	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN/HYDROLASE	MOLECULE: ARF-LIKE PROTEIN 2; CHAIN: A; ENGINEERED: YES; MUTATION: YES; MOLECULE: RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'- CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT; CHAIN: B; SYNONYM: GMP-PDE DELTA, P17 PROTEIN; EC: 3.1.4.17; ENGINEERED: YES	MUS MUSCULUS; MOUSE; GENE: ARL2; HOMO SAPIENS; HUMAN; GENE: PDE6D OR PDED;	M.HANZAL-BAYER,L.RENAULT,P.ROVERSI,A.WITTINGHOFER,R.C.HILLIG
2002_05_08	1ktg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: DIADENOSINE TETRAPHOSPHATE HYDROLASE; CHAIN: A, B; EC: 3.6.1.17; ENGINEERED: YES	CAENORHABDITIS ELEGANS; GENE: Y37H9A.6;	S.BAILEY,S.E.SEDELNIKOVA,G.M.BLACKBURN,H.M.ABDELGHANY, P.J.BAKER,A.G.MCLENNAN,J.B.RAFFERTY
2002_05_08	1kyq	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE, LYASE	MOLECULE: SIROHEME BIOSYNTHESIS PROTEIN MET8; CHAIN: A, B, C; SYNONYM: MET8P; EC: 1.-.-.- & 4.99.1.1; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: MET8;	H.L.SCHUBERT,E.RAUX,A.A.BRINDLEY,K.S.WILSON,C.P.HILL, M.J.WARREN
2002_05_08	1ldj	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: CULLIN HOMOLOG 1; CHAIN: A; FRAGMENT: RESIDUES 17-776; SYNONYM: CUL-1; ENGINEERED: YES; MOLECULE: RING-BOX PROTEIN 1; CHAIN: B; FRAGMENT: RESIDUES 19-108; SYNONYM: RBX1; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	N.ZHENG,B.A.SCHULMAN,L.SONG,J.J.MILLER,P.D.JEFFREY,P.WANG, C.CHU,D.M.KOEPP,S.J.ELLEDGE,M.PAGANO,R.C.CONAWAY, J.W.CONAWAY,J.W.HARPER,N.P.PAVLETICH

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field