EVA: Detailed information for proteins added on: 2002_04_17

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_04_17	1kv8	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE; CHAIN: A, B; SYNONYM: HEXULOSE-6-PHOSPHATE SYNTHASE; HUMPS; D-ARABINO 3- HEXULOSE 6-PHOSPHATE FORMALDEHYDE LYASE; EC: 4.1.2.-; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	E.WISE,W.S.YEW,P.C.BABBITT,J.A.GERLT,I.RAYMENT
2002_04_17	1gn9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYBRID CLUSTER	MOLECULE: HYBRID CLUSTER PROTEIN; SYNONYM: HCP; CHAIN: A, B; OTHER_DETAILS: CUBANE CLUSTER [4FE-4S] HYBRID CLUSTER [4FE-3S-3O] PERSULPHIDE BOND BETWEEN S7 (HYBRID CLUSTER) AND S OF CYS399	DESULFOVIBRIO DESULFURICANS; ATCC: 27774	S.MACEDO,E.MITCHELL,C.ROMAO,S.COOPER,R.COELHO,M.LIU, A.XAVIER,J.LEGALL,S.BAILEY,C.GARNER,W.HAGEN,M.TEIXEIRA, M.CARRONDO,P.LINDLEY
2002_04_17	1gnl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYBRID CLUSTER PROTEIN	MOLECULE: HYBRID CLUSTER PROTEIN; SYNONYM: HCP; CHAIN: A, B; OTHER_DETAILS: CUBANE CLUSTER [4FE-4S] HYBRID CLUSTER [4FE-3S-3O] PERSULPHIDE BOND BETWEEN S7 (HYBRID CLUSTER) AND S OF CYS399	DESULFOVIBRIO DESULFURICANS; ATCC: 27774	S.MACEDO,E.MITCHELL,C.ROMAO,S.COOPER,R.COELHO,M.LIU, A.XAVIER,J.LEGALL,S.BAILEY,C.GARNER,W.HAGEN,M.TEIXEIRA, M.CARRONDO,P.LINDLEY
2002_04_17	1gnt	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYBRID CLUSTER PROTEIN	MOLECULE: HYBRID CLUSTER PROTEIN; SYNONYM: HCP; CHAIN: A; ENGINEERED: YES; OTHER_DETAILS: CUBANE CLUSTER [4FE-4S] HYBRID CLUSTER [4FE-3S-3O] PERSULPHIDE BOND BETWEEN S7 (HYBRID CLUSTER) AND S OF CYS406	DESULFOVIBRIO VULGARIS STRAIN: HILDENBOROUGH NCIMB8303;	S.MACEDO,E.MITCHELL,C.ROMAO,S.COOPER,R.COELHO,M.LIU, A.XAVIER,J.LEGALL,S.BAILEY,C.GARNER,W.HAGEN,M.TEIXEIRA, M.CARRONDO,P.LINDLEY
2002_04_17	1gt8	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: DIHYDROPYRIMIDINE DEHYDROGENASE; SYNONYM: DPD, DHPDHASE, DIHYDROURACIL DEHYDROGENASE, DIHYDROTHYMINE DEHYDROGENASE; CHAIN: A, B, C, D; EC: 1.3.1.2; ENGINEERED: YES	SUS SCROFA; PIG; ORGAN: LIVER;	D.DOBRITZSCH,S.RICAGNO,G.SCHNEIDER,K.D.SCHNACKERZ, Y.LINDQVIST
2002_04_17	1gte	A-B-C-D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: DIHYDROPYRIMIDINE DEHYDROGENASE; SYNONYM: DPD, DHPDHASE, DIHYDROURACIL DEHYDROGENASE, DIHYDROTHYMINE DEHYDROGENASE; CHAIN: A, B, C, D; EC: 1.3.1.2; ENGINEERED: YES	SUS SCROFA; PIG; ORGAN: LIVER;	D.DOBRITZSCH,S.RICAGNO,G.SCHNEIDER,K.D.SCHNACKERZ, Y.LINDQVIST
2002_04_17	1gth	A-B-C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: DIHYDROPYRIMIDINE DEHYDROGENASE; SYNONYM: DPD, DHPDHASE, DIHYDROURACIL DEHYDROGENASE, DIHYDROTHYMINE DEHYDROGENASE; CHAIN: A, B, C, D; EC: 1.3.1.2; ENGINEERED: YES	SUS SCROFA; PIG; ORGAN: LIVER;	D.DOBRITZSCH,S.RICAGNO,G.SCHNEIDER,K.D.SCHNACKERZ, Y.LINDQVIST
2002_04_17	1gu0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; SYNONYM: TYPE II 3-DEHYDROQUINATE HYDRATASE, 3-DEHYDROQUINASE, TYPE II DHQASE; CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; EC: 4.2.1.10; ENGINEERED: YES	STREPTOMYCES COELICOLOR;	A.W.ROSZAK,T.KRELL,D.ROBINSON,I.S.HUNTER,J.R.COGGINS, A.J.LAPTHORN
2002_04_17	1gu1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; SYNONYM: TYPE II 3-DEHYDROQUINATE HYDRATASE, 3-DEHYDROQUINASE, TYPE II DHQASE; CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; EC: 4.2.1.10; ENGINEERED: YES	STREPTOMYCES COELICOLOR;	A.W.ROSZAK,D.A.ROBINSON,T.KRELL,I.S.HUNTER,J.R.COGGINS, A.J.LAPTHORN
2002_04_17	1gu8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PHOTORECEPTOR	MOLECULE: SENSORY RHODOPSIN II; SYNONYM: SR-II; CHAIN: A; ENGINEERED: YES; OTHER_DETAILS: MODEL 1 - GROUND STATE, MODEL 2 - K-STATE	NATRONOMONAS PHARAONIS; NATRONOBACTERIUM PHARAONIS;	K.EDMAN,A.ROYANT,P.NOLLERT,C.A.MAXWELL,E.PEBAY-PEYROULA, J.NAVARRO,R.NEUTZE,E.M.LANDAU
2002_04_17	1gue	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PHOTORECEPTOR	MOLECULE: SENSORY RHODOPSIN II; SYNONYM: SR-II; CHAIN: A; ENGINEERED: YES; OTHER_DETAILS: K-STATE, REFINED WITH EXTRAPOLATED DATA	NATRONOMONAS PHARAONIS; NATRONOBACTERIUM PHARAONIS;	K.EDMAN,A.ROYANT,P.NOLLERT,C.A.MAXWELL,E.PEBAY-PEYROULA, J.NAVARRO,R.NEUTZE,E.M.LANDAU
2002_04_17	1gx6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	POLYMERASE	MOLECULE: RNA-DIRECTED RNA POLYMERASE; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN, RESIDUES 2420-2950; EC: 2.7.7.48; ENGINEERED: YES	HEPATITIS C VIRUS (ISOLATE BK); HCV; STRAIN: BK;	S.BRESSANELLI,F.A.REY
2002_04_17	1h8p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PHOSPHORYLCHOLINE-BINDING PROTEIN	MOLECULE: SEMINAL PLASMA PROTEIN PDC-109; CHAIN: A, B; FRAGMENT: RESIDUES 26-134	BOS TAURUS; BULL; TISSUE: SPERM	D.A.WAH,C.FERNANDEZ-TORNERO,J.J.CALVETE,A.ROMERO
2002_04_17	1iiq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE, HYDROLASE INHIBITOR	MOLECULE: PROTEASE RETROPEPSIN; CHAIN: A, B; FRAGMENT: HIV-1 PROTEASE; SYNONYM: HIV-1 PROTEASE; EC: 3.4.23.16; ENGINEERED: YES; MOLECULE: BOC-PS0-PHE-GLN-PHE-NH2; CHAIN: I; ENGINEERED: YES	HUMAN IMMUNODEFICIENCY VIRUS - 1; SYNTHETIC: YES; OTHER_DETAILS: PEPTIDOMIMETIC INHIBITOR	J.DOHNALEK,J.HASEK,J.DUSKOVA,H.PETROKOVA,M.HRADILEK, M.SOUCEK,J.KONVALINKA,J.BRYNDA,J.SEDLACEK,M.FABRY
2002_04_17	1ijj	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CONTRACTILE PROTEIN	MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; CHAIN: A, B; SYNONYM: ALPHA-ACTIN 1; ACTIN ALPHA, SKELETAL MUSCLE; ALPHA-SKELETAL ACTIN	ORYCTOLAGUS CUNICULUS; RABBIT; TISSUE: MUSCLE	S.M.VOROBIEV,M.R.BUBB,S.C.ALMO
2002_04_17	1j5e	B-C-D-E-F-G-H-I-J-K-L-M-N-O-P-Q-R-S-T	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBOSOME	MOLECULE: 16S RIBOSOMAL RNA; CHAIN: A; MOLECULE: 30S RIBOSOMAL PROTEIN S2; CHAIN: B; MOLECULE: 30S RIBOSOMAL PROTEIN S3; CHAIN: C; MOLECULE: 30S RIBOSOMAL PROTEIN S4; CHAIN: D; MOLECULE: 30S RIBOSOMAL PROTEIN S5; CHAIN: E; MOLECULE: 30S RIBOSOMAL PROTEIN S6; CHAIN: F; MOLECULE: 30S RIBOSOMAL PROTEIN S7; CHAIN: G; MOLECULE: 30S RIBOSOMAL PROTEIN S8; CHAIN: H; MOLECULE: 30S RIBOSOMAL PROTEIN S9; CHAIN: I; MOLECULE: 30S RIBOSOMAL PROTEIN S10; CHAIN: J; MOLECULE: 30S RIBOSOMAL PROTEIN S11; CHAIN: K; MOLECULE: 30S RIBOSOMAL PROTEIN S12; CHAIN: L; MOLECULE: 30S RIBOSOMAL PROTEIN S13; CHAIN: M; MOLECULE: 30S RIBOSOMAL PROTEIN S14; CHAIN: N; MOLECULE: 30S RIBOSOMAL PROTEIN S15; CHAIN: O; MOLECULE: 30S RIBOSOMAL PROTEIN S16; CHAIN: P; MOLECULE: 30S RIBOSOMAL PROTEIN S17; CHAIN: Q; MOLECULE: 30S RIBOSOMAL PROTEIN S18; CHAIN: R; MOLECULE: 30S RIBOSOMAL PROTEIN S19; CHAIN: S; MOLECULE: 30S RIBOSOMAL PROTEIN S20; CHAIN: T; MOLECULE: 30S RIBOSOMAL PROTEIN THX; CHAIN: V	THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA; THERMUS THERMOPHILUS; BACTERIA	B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR.,R.MORGAN-WARREN, A.P.CARTER,C.VONRHEIN,T.HARTSCH,V.RAMAKRISHNAN
2002_04_17	1kv8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE; CHAIN: A, B; SYNONYM: HEXULOSE-6-PHOSPHATE SYNTHASE; HUMPS; D-ARABINO 3- HEXULOSE 6-PHOSPHATE FORMALDEHYDE LYASE; EC: 4.1.2.-; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	E.WISE,W.S.YEW,P.C.BABBITT,J.A.GERLT,I.RAYMENT
2002_04_17	1kw1	A-B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE; CHAIN: A, B; SYNONYM: HEXULOSE-6-PHOSPHATE SYNTHASE; HUMPS; D-ARABINO 3- HEXULOSE 6-PHOSPHATE FORMALDEHYDE LYASE; EC: 4.1.2.-; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	E.WISE,W.S.YEW,P.C.BABBITT,J.A.GERLT,I.RAYMENT

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field